Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,503,441 – 11,503,554 |
Length | 113 |
Max. P | 0.899109 |
Location | 11,503,441 – 11,503,554 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.86 |
Mean single sequence MFE | -16.24 |
Consensus MFE | -12.70 |
Energy contribution | -12.54 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.18 |
Mean z-score | -2.00 |
Structure conservation index | 0.78 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11503441 113 + 22224390 UCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUUGUAAGCAGUGAAAACUACAAAUGAUACAAUCGUUUGUAGCGCUUUUCU----UCUUCC---UUACUUCCCCCAUAACUUAUUUCCC ................(((.....))).......(((((.((.((((((((((((((((...)))))))))))...))))).----.))..)---))))..................... ( -18.50) >DroSec_CAF1 905 116 + 1 GCAAUAAUAACAUAACAGCCUUUUGCUCAUUAUUGUAAACAGUUAAAACUACAAAUGAUACAAUCGUUUGUAGCGCUUUUCUUUCCUCUUCU---UCCCUUCUCCGAUAACUU-UUCCCC ((..............(((..(((((........)))))..)))....(((((((((((...))))))))))).))................---..................-...... ( -16.20) >DroSim_CAF1 18837 116 + 1 GCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUUGUAAACAGUUAAAACUACAAAUGAUACAAUCGUUUGUAGCGCUUUUCUUUCCUCUUCU---UCCCUUCUCCCAUAACUU-UUCCCC ((.(((((((......(((.....)))..)))))))............(((((((((((...))))))))))).))................---..................-...... ( -15.60) >DroEre_CAF1 25179 116 + 1 GCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUUGCAGACGGUAAAAAGUACAAAUGAUACAACCGUUUGUAGCGCUUUUCUUUCCUCUUUC---UCCCUUCGUCCAUAACUU-UUCCCC ((((((((........(((.....))).))))))))(((.((..(((((((((((((.......)))))))...))))))....)))))...---..................-...... ( -18.00) >DroYak_CAF1 24803 119 + 1 GCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUCGUAGACAGUAAAAAGUACAAAUGAUACAACCGUUUGUAACGCUUUUCUUUCCUCUUUUUCUUCCCUGCUUCCAUAACUU-UUCCCC (((.............(((.....))).......(..((.((..(((((((((((((.......)))))))...)))))))).))..)...........)))...........-...... ( -12.90) >consensus GCAAUAAUAACAUAACAGCAUUUUGCUCAUUAUUGUAAACAGUAAAAACUACAAAUGAUACAAUCGUUUGUAGCGCUUUUCUUUCCUCUUCU___UCCCUUCUCCCAUAACUU_UUCCCC ................(((..(((((........))))).........(((((((((.......))))))))).)))........................................... (-12.70 = -12.54 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:22 2006