Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,499,279 – 11,499,380 |
Length | 101 |
Max. P | 0.929076 |
Location | 11,499,279 – 11,499,380 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.46 |
Mean single sequence MFE | -26.15 |
Consensus MFE | -11.92 |
Energy contribution | -13.70 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.37 |
Structure conservation index | 0.46 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11499279 101 - 22224390 ACAUCACUGAAAUCAAUGG------------------AAACGUUAAUGAUGAUGAUGAUGACGGUAAGUUUGUUGAUUAUUAUUAACGCAUAGUGUGUCAGUCUGGUCACA-UUAUGCAA .................(.------------------...)((((((((((((.(....(((.....)))...).))))))))))))((((((((((.(......).))))-)))))).. ( -29.50) >DroSec_CAF1 33451 98 - 1 ACAUCACUGAAAUCAAUGG------------------CAGCGUUAAUGAUGAUGAUGA---UGGUAAGUUUGUUGAUUAUUAUUAACGCAUAGUGUGUCAGUCUGGUCACA-UUAUGCAA ....((.((....)).))(------------------(.((((((((((((((((..(---........)..)).))))))))))))))((((((((.(......).))))-)))))).. ( -28.00) >DroAna_CAF1 43472 111 - 1 ACAGCCCUAAUUAUAAUGGCAUAAUGCUAUAAUGUUAUAAUGUUAAUGAUAAUGAUA---------AUGAUGCUGGCGAAUAUUAACCCAUAGUCGGACAGUUUGGUCACAAUUAUGCCA ................(((((((((.......((((((.......)))))).((((.---------....(((((((...............))))).)).....))))..))))))))) ( -20.96) >consensus ACAUCACUGAAAUCAAUGG__________________AAACGUUAAUGAUGAUGAUGA____GGUAAGUUUGUUGAUUAUUAUUAACGCAUAGUGUGUCAGUCUGGUCACA_UUAUGCAA .........................................((((((((((((.(..................).))))))))))))((((((((((.(......).)))).)))))).. (-11.92 = -13.70 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:21 2006