Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,490,768 – 11,490,865 |
Length | 97 |
Max. P | 0.920185 |
Location | 11,490,768 – 11,490,865 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -15.72 |
Energy contribution | -15.83 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.72 |
Structure conservation index | 0.66 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11490768 97 + 22224390 GUUGGCUAAACUAGGAAAAAA----------AAUGUG-GAAAAAUCGCGUUGAAAAAGA--------AAACUUUGCGACACUUUCAAGUGUCGACGGCG-GCUGG---UGGGCUCAUAAC ((.((((..(((((.......----------((((((-(.....)))))))........--------...(.((((((((((....))))))).))).)-.))))---).)))).))... ( -22.70) >DroSec_CAF1 25603 97 + 1 GU-GGCCAAACUAGGAAA--A----------AAUGUG-GAAAAAUAGCGUUGAAAAAGA--------AAACUUUGCGACACUUUCAAGUGUCGACGGCG-GCUGGUGGUGGGCUCAUAAC ((-((((..(((((....--.----------..(((.-.....))).(((((..((((.--------...)))).(((((((....))))))).)))))-.)))))....))).)))... ( -26.30) >DroAna_CAF1 34109 113 + 1 ----GCCAAACUAGAAAAAAAAAAUACAGAAAAUAUGGGGAAAAUAGCGUUAAAAAAAAAAAAUAGGAAACUUUGCGACACUUUCAAGUGUCGGUGGAGGGCUGG---GUGGCUCGUAAC ----.............................((((((..(..((((.((.............((....))...(((((((....)))))))....)).)))).---.)..)))))).. ( -22.70) >consensus GU_GGCCAAACUAGGAAAAAA__________AAUGUG_GAAAAAUAGCGUUGAAAAAGA________AAACUUUGCGACACUUUCAAGUGUCGACGGCG_GCUGG___UGGGCUCAUAAC ....(((...((((.................(((((..........)))))........................(((((((....)))))))........)))).....)))....... (-15.72 = -15.83 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:18 2006