Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,281,859 – 1,281,965 |
Length | 106 |
Max. P | 0.877535 |
Location | 1,281,859 – 1,281,965 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -42.62 |
Consensus MFE | -30.14 |
Energy contribution | -33.20 |
Covariance contribution | 3.06 |
Combinations/Pair | 1.11 |
Mean z-score | -2.20 |
Structure conservation index | 0.71 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1281859 106 + 22224390 CCGCCCCUCCAACAGUUGCACUUUCUGCCACCCUCUUUCCGAAUCUGAACCAGAGUCUGGAGUCUGGAGGGUGGAUGGUGGAGGGCAAAUAGUGGCGGAGGGACUG ....((((((..((.((((.(((((..(((((((((((((((.((((...)))).)).))))...))))))))).....)))))))))....))..)))))).... ( -46.80) >DroSec_CAF1 14585 106 + 1 CCGCCCCUCCAACAGUUGCACUUUCUGCCGCCCUCUUUCCGAAUCUGAACCAGAGUCUGGAGUCUGGAGGGUGGAUGGUGGAGGGCAGAUAGUGGCGUAGGGACUG ....(((((((....((((.(((((..(((((((((((((((.((((...)))).)).))))...))))))))).....)))))))))....)))...)))).... ( -42.20) >DroSim_CAF1 12135 105 + 1 CGGCCCCUCCAACAGUUGCACUUUCUGCCGCCCUCUUUCCAAAUCUGAACCAGAGUCUGGAGUCUGGAGGGUAGA-GUUGGAGGGCAGAUAGUGGCGGAGGGACUG (((.((((((..(....)((((.((((((((((((((((((..((((...))))...)))))...)))))))...-.......)))))).))))..)))))).))) ( -44.50) >DroEre_CAF1 16337 92 + 1 -UGCCCCUCCAACAGUUGCACUUUCAGCCGCCCUCUUACCGAAUCUGAACCAGAGUCUCGAGUCUGGAGGGUGGC-GGUGGAA------------CUACGGAACUG -......(((...((((.((((....((((((((((.(((((.((((...))))...))).))..))))))))))-)))).))------------))..))).... ( -37.00) >consensus CCGCCCCUCCAACAGUUGCACUUUCUGCCGCCCUCUUUCCGAAUCUGAACCAGAGUCUGGAGUCUGGAGGGUGGA_GGUGGAGGGCAGAUAGUGGCGGAGGGACUG ....((((((..((.((((.(((((..((((((((((((((..((((...))))...)))))...))))))))).....)))))))))....))..)))))).... (-30.14 = -33.20 + 3.06)
Location | 1,281,859 – 1,281,965 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -38.03 |
Consensus MFE | -27.67 |
Energy contribution | -29.91 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.17 |
Mean z-score | -1.86 |
Structure conservation index | 0.73 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.780038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1281859 106 - 22224390 CAGUCCCUCCGCCACUAUUUGCCCUCCACCAUCCACCCUCCAGACUCCAGACUCUGGUUCAGAUUCGGAAAGAGGGUGGCAGAAAGUGCAACUGUUGGAGGGGCGG ..(((((((((.((....((((.((.......((((((((.....(((.((.((((...)))).)))))..)))))))).....)).)))).)).))))))))).. ( -41.80) >DroSec_CAF1 14585 106 - 1 CAGUCCCUACGCCACUAUCUGCCCUCCACCAUCCACCCUCCAGACUCCAGACUCUGGUUCAGAUUCGGAAAGAGGGCGGCAGAAAGUGCAACUGUUGGAGGGGCGG ..((((((..((((((.((((((.(((.(..(((.....(((((........))))).........)))..).))).)))))).)))).....))...)))))).. ( -35.94) >DroSim_CAF1 12135 105 - 1 CAGUCCCUCCGCCACUAUCUGCCCUCCAAC-UCUACCCUCCAGACUCCAGACUCUGGUUCAGAUUUGGAAAGAGGGCGGCAGAAAGUGCAACUGUUGGAGGGGCCG ..((((((((((((((.((((((.......-....(((((.....((((((.((((...))))))))))..))))).)))))).)))).....).))))))))).. ( -42.40) >DroEre_CAF1 16337 92 - 1 CAGUUCCGUAG------------UUCCACC-GCCACCCUCCAGACUCGAGACUCUGGUUCAGAUUCGGUAAGAGGGCGGCUGAAAGUGCAACUGUUGGAGGGGCA- ..(((((.(((------------((.(((.-(((.(((((...((.((((..((((...))))))))))..))))).))).....))).))))).....))))).- ( -32.00) >consensus CAGUCCCUCCGCCACUAUCUGCCCUCCACC_UCCACCCUCCAGACUCCAGACUCUGGUUCAGAUUCGGAAAGAGGGCGGCAGAAAGUGCAACUGUUGGAGGGGCGG ..(((((((((.((((.((((((.(((....(((.....(((((........))))).........)))....))).)))))).)))).......))))))))).. (-27.67 = -29.91 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:34 2006