Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,478,432 – 11,478,528 |
Length | 96 |
Max. P | 0.612604 |
Location | 11,478,432 – 11,478,528 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 82.62 |
Mean single sequence MFE | -20.24 |
Consensus MFE | -12.84 |
Energy contribution | -13.15 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.06 |
Mean z-score | -1.79 |
Structure conservation index | 0.63 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11478432 96 - 22224390 AUCCAUCUCACUCAGGCCAGU-----CU-CCCCU----CUCGCUCGCGCCCCUCUCUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUC-------C ..............((((...-----..-.....----...((....))..........((((((.....))).)))))))....((((((......))))))..-------. ( -17.20) >DroSec_CAF1 16539 96 - 1 AUGCAUCUCACUCAGGCCCGU-----CU-ACCCU----CUCGCUUGCUCCCCUCUCUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUC-------C ..............(((((..-----..-((...----...((((((..............)))).))....))..)))))....((((((......))))))..-------. ( -21.04) >DroSim_CAF1 11455 96 - 1 AUCCAUCUCACUCAGGCCCGU-----CU-ACCCU----CUCGCUUGCUCCCCUCUCUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUC-------C ..............(((((..-----..-((...----...((((((..............)))).))....))..)))))....((((((......))))))..-------. ( -21.04) >DroAna_CAF1 25109 112 - 1 GUCCGUUGCACUCCGGAUACUGUUAUCUCACUCUCUCCCUCGCUUUCUCCU-CCUUUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUCACAGUGCC (((((........)))))(((((............................-.....(((((....((((......)))))))))((((((......))))))..)))))... ( -21.70) >consensus AUCCAUCUCACUCAGGCCAGU_____CU_ACCCU____CUCGCUUGCUCCCCUCUCUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUC_______C ..............................((((.......((((((..............)))).)).......))))......((((((......)))))).......... (-12.84 = -13.15 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:14 2006