Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,468,553 – 11,468,658 |
Length | 105 |
Max. P | 0.655185 |
Location | 11,468,553 – 11,468,658 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 89.73 |
Mean single sequence MFE | -19.33 |
Consensus MFE | -16.67 |
Energy contribution | -17.00 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.86 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11468553 105 - 22224390 UUUGUGAAAUUCCAUAAAAAAAAAUGGCAAUAAAAUACUGUGCUAAUAAAGCGCGACUCACAC--------ACACACGUGUCGAAAAGGCCAUUAAAUGAACUUUAUCACCGA ((((((......))))))....((((((..........((((((.....))))))..((((((--------......)))).))....))))))................... ( -20.90) >DroSec_CAF1 13788 104 - 1 AAUGUGA-AUUCCAUAA----AAAUGGCAAUAAAAUACUGGGCUAAUAAAGCGCGACUCACACAC----ACACACACGUGUCGAAAAGGCCAUUUAAUGAACUUUAUCACCGA ...((((-....(((..----(((((((..........((.(((.....))).))..((((((..----........)))).))....))))))).))).......))))... ( -17.30) >DroSim_CAF1 8678 109 - 1 UAUGUGAAAUUCCAUAA----AAAUGGCAAUAAAAUACUGUGCUAAUAAAGCGCGACUCACACACACACACACACACGUGUCGAAAAGGCCAUUUAAUGAACUUUAUCACCGA ...((((.....(((..----(((((((..........((((((.....))))))............((((......)))).......))))))).))).......))))... ( -19.80) >consensus UAUGUGAAAUUCCAUAA____AAAUGGCAAUAAAAUACUGUGCUAAUAAAGCGCGACUCACACAC____ACACACACGUGUCGAAAAGGCCAUUUAAUGAACUUUAUCACCGA ..(((((.(((((((........)))).))).......((((((.....))))))..)))))..............((.((.((((((..(((...)))..)))).)))))). (-16.67 = -17.00 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:11 2006