Locus 4365

Sequence ID X_DroMel_CAF1
Location 11,467,519 – 11,467,635
Length 116
Max. P 0.593818
window7169

overview

Window 9

Location 11,467,519 – 11,467,635
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.55
Mean single sequence MFE -33.20
Consensus MFE -24.59
Energy contribution -23.93
Covariance contribution -0.66
Combinations/Pair 1.11
Mean z-score -1.83
Structure conservation index 0.74
SVM decision value 0.12
SVM RNA-class probability 0.593818
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11467519 116 - 22224390
----AAUAUUCCUCCACAUUUUUUUUUUUCUGUAGCAUAAAGCACCUCAAUUAUGGAGUCCAUAGCCAAGUCUGGCGGGUGAUUGGGUUGCAAGCGAUGAAUAUGCAAUGUGUAGGAACU
----....(((((.((((((..........((((((......(((((....(((((...)))))((((....))))))))).....)))))).(((.......))))))))).))))).. ( -33.60)
>DroSec_CAF1 12738 120 - 1
UCUGAAUAUUCCUGCACAUUUUUUUUUUCCUGGAGCAUAAAGCACCUCAAUUAUGGAGUCCAUAGCCCAGUCUGGCGGGUGAUUGGGUUGCAAGCGAUGAAUAUGCAAUGUGCAGGAACU
........((((((((((((...(((.(((((((((.....)).((........))..))).((((((((((........))))))))))..)).)).))).....)))))))))))).. ( -39.00)
>DroYak_CAF1 12719 101 - 1
------------------AUUUAUUUUUUCUGGAGCAUAAGGCACCUCAAUUAUGGAGUCCAUAGCCAAGUCUGGCGGGUGAUUG-GUUGCAAGCGAUGAAUAUGCAACGUGCAGGAACU
------------------........((((((..((......(((((....(((((...)))))((((....)))))))))....-((((((...........)))))))).)))))).. ( -27.00)
>consensus
____AAUAUUCCU_CACAUUUUUUUUUUUCUGGAGCAUAAAGCACCUCAAUUAUGGAGUCCAUAGCCAAGUCUGGCGGGUGAUUGGGUUGCAAGCGAUGAAUAUGCAAUGUGCAGGAACU
..........................(((((...((((....(((((....(((((...)))))(((......)))))))).....((((((...........))))))))))))))).. (-24.59 = -23.93 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:10 2006