Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,464,722 – 11,464,819 |
Length | 97 |
Max. P | 0.946737 |
Location | 11,464,722 – 11,464,819 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 96.63 |
Mean single sequence MFE | -26.86 |
Consensus MFE | -26.47 |
Energy contribution | -26.22 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -2.11 |
Structure conservation index | 0.99 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.946737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11464722 97 + 22224390 AGAAAAGAACCGAAAAUGAAAUUGCUCUAACGGUGUUUGCUCCCGUGAGGCGUUUUUCGAUUCACCCACUAU---UUAUAAGGGUGACUUUUCGGCACAA .........((((((((((((.(((.((.((((.(......))))).)))))..)))))..((((((.....---......)))))).)))))))..... ( -27.40) >DroSec_CAF1 10054 97 + 1 UGAAAAGAACCGAAAACGAAAUUGCUCUAACGGUGUUUGCUCCCGUGAGGCGUUUUUCGAUUCACCCACUAU---UUAUAAGGGUGACUUUUCCGCACAA .((((((.........(((((.(((.((.((((.(......))))).)))))..)))))..((((((.....---......))))))))))))....... ( -27.10) >DroEre_CAF1 9907 100 + 1 AGAAAAGAACCGAAAACGAAAUUGCUCUAACGGUGUUUGCUCCCGUGAGGCGUUUUUCGAUUCACCCACUAUUAUUUAUAAGGGUGACUUUUCCGCACAA .((((((.........(((((.(((.((.((((.(......))))).)))))..)))))..((((((..............))))))))))))....... ( -27.04) >DroYak_CAF1 9896 98 + 1 AGAAAAGAACCGAAAAUGAAAUUGCUCUAACGGUGUUUGCUCCCGUGAGGCGUUUUUCGAUUCACCCACUAUU--UUAUAAGGGUGACUUUUCCGCACAA .((((((...((((((......(((.((.((((.(......))))).))))).))))))..((((((......--......))))))))))))....... ( -25.90) >consensus AGAAAAGAACCGAAAACGAAAUUGCUCUAACGGUGUUUGCUCCCGUGAGGCGUUUUUCGAUUCACCCACUAU___UUAUAAGGGUGACUUUUCCGCACAA .((((((.........(((((.(((.((.((((.(......))))).)))))..)))))..((((((..............))))))))))))....... (-26.47 = -26.22 + -0.25)
Location | 11,464,722 – 11,464,819 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 96.63 |
Mean single sequence MFE | -27.65 |
Consensus MFE | -26.90 |
Energy contribution | -26.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.97 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11464722 97 - 22224390 UUGUGCCGAAAAGUCACCCUUAUAA---AUAGUGGGUGAAUCGAAAAACGCCUCACGGGAGCAAACACCGUUAGAGCAAUUUCAUUUUCGGUUCUUUUCU ..(.((((((((.((((((......---.....))))))...((((...((((.((((.........)))).)).))..)))).)))))))).)...... ( -29.00) >DroSec_CAF1 10054 97 - 1 UUGUGCGGAAAAGUCACCCUUAUAA---AUAGUGGGUGAAUCGAAAAACGCCUCACGGGAGCAAACACCGUUAGAGCAAUUUCGUUUUCGGUUCUUUUCA .......((((((((((((......---.....))))))((((((((..((((.((((.........)))).)).)).......)))))))).)))))). ( -27.20) >DroEre_CAF1 9907 100 - 1 UUGUGCGGAAAAGUCACCCUUAUAAAUAAUAGUGGGUGAAUCGAAAAACGCCUCACGGGAGCAAACACCGUUAGAGCAAUUUCGUUUUCGGUUCUUUUCU ......(((((((((((((((((.....)))).))))))((((((((..((((.((((.........)))).)).)).......)))))))).))))))) ( -28.20) >DroYak_CAF1 9896 98 - 1 UUGUGCGGAAAAGUCACCCUUAUAA--AAUAGUGGGUGAAUCGAAAAACGCCUCACGGGAGCAAACACCGUUAGAGCAAUUUCAUUUUCGGUUCUUUUCU ......(((((((((((((......--......))))))((((((((..((((.((((.........)))).)).)).......)))))))).))))))) ( -26.20) >consensus UUGUGCGGAAAAGUCACCCUUAUAA___AUAGUGGGUGAAUCGAAAAACGCCUCACGGGAGCAAACACCGUUAGAGCAAUUUCAUUUUCGGUUCUUUUCU .......((((((((((((((((.....)))).))))))((((((((..((((.((((.........)))).)).)).......)))))))).)))))). (-26.90 = -26.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:08 2006