Locus 4362

Sequence ID X_DroMel_CAF1
Location 11,463,017 – 11,463,122
Length 105
Max. P 0.592779
window7165

overview

Window 5

Location 11,463,017 – 11,463,122
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 65.60
Mean single sequence MFE -17.86
Consensus MFE -9.56
Energy contribution -10.04
Covariance contribution 0.48
Combinations/Pair 1.25
Mean z-score -1.46
Structure conservation index 0.54
SVM decision value 0.12
SVM RNA-class probability 0.592779
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11463017 105 - 22224390
----------UAAACAAAUAAAAAAAAACCAACGAAUGAAAGUUUGUCAAUGUAAAAUGAAACCGA-----UAUCGAAUUCUAGCCGGUUCAUUGCGGAUCCAGAAUUCAUGACAAGUCG
----------...............................((((((((.........((......-----..))(((((((..(((........)))....))))))).))))))).). ( -16.40)
>DroSec_CAF1 8379 103 - 1
----------UAAACAAAUAAA--AAAGCCAACAAAUGAAAGUUUGUCAAUGUAAAAUGAAACCGA-----UCCAGAAUUCUAGCCGGUUCAUUGCGGGUACAGAAUUCAUGCCAAGUCG
----------............--.......((((((....))))))................(((-----(.(((((((((.(((.((.....)).)))..))))))).))....)))) ( -18.50)
>DroEre_CAF1 8231 79 - 1
----------UAAAAA------------AA--------------UGUCAAUGUAAAAUGAAACCGA-----UAUCGAAUUCUAGCCGGUUCAUUGCGGCUCUAGAAUUCAUGCCAAGUCG
----------......------------.(--------------((((................))-----))).((((((((((((........)))))..)))))))........... ( -15.29)
>DroYak_CAF1 8173 93 - 1
----------UAAAAA------------CAAACAAAUAAAAGUUUGUCAAUGUAAAAUGAAACCGA-----UAUCGGAUUCUAGCCGGUUCAUUGCGGGUCUAGAAUUCAUGACAAGUCG
----------.....(------------(((((........))))))...(((...(((((.(((.-----...))).((((((((.((.....)).)).))))))))))).)))..... ( -24.60)
>DroAna_CAF1 12232 107 - 1
AUAUACGAAAUAAACACACAAAAUUAGAGACACAAAUUCG----AGUCAUUGUAAAAUGAAACCAAAUAAAAACAAAAUUCGAACCGGUUGACUGCCAGCUUCGAAUU---------UCG
.....((((((.............................----..(((((....)))))...................((((((.(((.....))).).))))))))---------))) ( -14.50)
>consensus
__________UAAACA_A_AAA___A__CAAACAAAUGAAAGUUUGUCAAUGUAAAAUGAAACCGA_____UAUCGAAUUCUAGCCGGUUCAUUGCGGGUCUAGAAUUCAUGACAAGUCG
...........................................................................((((((((((((........)))..)))))))))........... ( -9.56 = -10.04 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:06 2006