Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,461,644 – 11,461,761 |
Length | 117 |
Max. P | 0.697333 |
Location | 11,461,644 – 11,461,761 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.08 |
Mean single sequence MFE | -17.36 |
Consensus MFE | -14.52 |
Energy contribution | -14.77 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.84 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11461644 117 + 22224390 AUGCAUUUAAUCAAAGUAAAGACUAAACUCGCGCUAAAAAUGCCCGAAUUCGAAAGAAACUAGCGAAAAGCCC-AAUUCAAAAAUCGCACAAUAAAU-UGCAAAGUCCAAAGCAACAAC .(((((((.....))))...((((....((((((.......)).....(((....)))....)))).......-............(((........-)))..))))....)))..... ( -17.40) >DroSec_CAF1 7033 117 + 1 AUGCAUUUAAUCAAAGUAAAGACUAAACUCGCGCUGAAAAUGCCCGAAUUCGAAAGAAACUAGCGAAAAGCGC-AAUUCAAAAAUCGCACAAUAAAU-UGCAACAUCCACAGCAACAAC .(((..........................(((((.....(((.....(((....)))....)))...)))))-............(((........-)))..........)))..... ( -19.30) >DroEre_CAF1 6819 119 + 1 AUGCAUUUAAUCAAAGUAAAGACUAAACUCGCGCUGAAAACGCCCGAAAUCGAAAGAAACUAGCGAAAAACCCCAUUUCGAAAAUCGCACAAUAAAUUUGCAAAGUCCACAGCAACAAC .(((((((.....))))...((((....(((((((....).))......((....)).....))))....................(((.........)))..))))....)))..... ( -15.20) >DroYak_CAF1 6736 117 + 1 AUGCAUUUAAUCAAAGUAAAGACUAAACUCGUGCUGAAAAUGCCCGAAUUCGAAAGAAACUAGCGAAAAAUCC-AAUUCAAAAAUCGCACAAUAAAU-UGCAAAGUCUACAGCAACAGC .(((((((.....))))..(((((....(((.((.......)).))).(((....)))....((((.......-..........)))).........-.....)))))...)))..... ( -17.53) >consensus AUGCAUUUAAUCAAAGUAAAGACUAAACUCGCGCUGAAAAUGCCCGAAUUCGAAAGAAACUAGCGAAAAACCC_AAUUCAAAAAUCGCACAAUAAAU_UGCAAAGUCCACAGCAACAAC .((((.........(((...........(((.((.......)).))).(((....)))))).((((..................))))..........))))................. (-14.52 = -14.77 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:05 2006