Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,270,055 – 1,270,153 |
Length | 98 |
Max. P | 0.680189 |
Location | 1,270,055 – 1,270,153 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -36.33 |
Consensus MFE | -35.97 |
Energy contribution | -35.97 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.34 |
Structure conservation index | 0.99 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520631 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1270055 98 + 22224390 UCCACCGGGAAGUGGAUCGGGCGAAGCCUAGGAGGCAACUUGGGGAAGGGGAGCAACCGGGUGCUCCGAGUGGGGAAAGUAGUAGCCCUGCUCAUAGA---- (((.(((((..((...(..(((...)))..)...))..))))))))...((((((......))))))(((..(((..........)))..))).....---- ( -36.80) >DroSec_CAF1 2761 102 + 1 UCCACCGGGAAGUGGAUCGGGCGAAGCCAAGGAGGCAACUUGGGGAAGGGGAGCAACCGGGUGCUCCGAGUGGGGAAAGUAGUAGCCCUGCUCAUACAUGGU (((.(((((...((..((.(((...)))...))..)).))))))))...((((((......))))))(((..(((..........)))..)))......... ( -36.10) >DroSim_CAF1 835 102 + 1 UCCACCGGGAAGUGGAUCGGGCGAAGCCAAGGAGGCAACUUGGGGAAGGGGAGCAACCGGGUGCUCCGAGUGGGGAAAGUAGUAGCCCUGCUCAUAGAUGGU (((.(((((...((..((.(((...)))...))..)).))))))))...((((((......))))))(((..(((..........)))..)))......... ( -36.10) >consensus UCCACCGGGAAGUGGAUCGGGCGAAGCCAAGGAGGCAACUUGGGGAAGGGGAGCAACCGGGUGCUCCGAGUGGGGAAAGUAGUAGCCCUGCUCAUAGAUGGU (((.(((((.......((....)).(((.....)))..))))))))...((((((......))))))(((..(((..........)))..)))......... (-35.97 = -35.97 + -0.00)
Location | 1,270,055 – 1,270,153 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -28.73 |
Consensus MFE | -28.70 |
Energy contribution | -28.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 1.00 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680189 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1270055 98 - 22224390 ----UCUAUGAGCAGGGCUACUACUUUCCCCACUCGGAGCACCCGGUUGCUCCCCUUCCCCAAGUUGCCUCCUAGGCUUCGCCCGAUCCACUUCCCGGUGGA ----..........((((.................((((((......))))))..........(..(((.....)))..)))))..((((((....)))))) ( -28.50) >DroSec_CAF1 2761 102 - 1 ACCAUGUAUGAGCAGGGCUACUACUUUCCCCACUCGGAGCACCCGGUUGCUCCCCUUCCCCAAGUUGCCUCCUUGGCUUCGCCCGAUCCACUUCCCGGUGGA ....(((....)))((((.................((((((......))))))..........(..(((.....)))..)))))..((((((....)))))) ( -28.90) >DroSim_CAF1 835 102 - 1 ACCAUCUAUGAGCAGGGCUACUACUUUCCCCACUCGGAGCACCCGGUUGCUCCCCUUCCCCAAGUUGCCUCCUUGGCUUCGCCCGAUCCACUUCCCGGUGGA ..............((((.................((((((......))))))..........(..(((.....)))..)))))..((((((....)))))) ( -28.80) >consensus ACCAUCUAUGAGCAGGGCUACUACUUUCCCCACUCGGAGCACCCGGUUGCUCCCCUUCCCCAAGUUGCCUCCUUGGCUUCGCCCGAUCCACUUCCCGGUGGA ..............((((.................((((((......))))))..........(..(((.....)))..)))))..((((((....)))))) (-28.70 = -28.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:32 2006