Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,459,322 – 11,459,440 |
Length | 118 |
Max. P | 0.802966 |
Location | 11,459,322 – 11,459,440 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.31 |
Mean single sequence MFE | -27.77 |
Consensus MFE | -18.37 |
Energy contribution | -18.60 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.10 |
Mean z-score | -1.86 |
Structure conservation index | 0.66 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11459322 118 - 22224390 ACUCACACAAAAUGUUAGUCCAAAUGGACAUCUGAGCCAUGGGCUUAGUGAGCCAAGGCGAUAGGCUGUAUAUGUGUACCCAGACAGCAUGCACAGCGAAAUGUUAACAAAGAAAACA ............(((((((((....))))..(((.(((...(((((...)))))..)))..)))(((((.(((((((......))).)))).))))).......)))))......... ( -32.60) >DroSec_CAF1 4830 96 - 1 ----------------AGUCUAAUUGGACUUCUUAGCU------CCAGUGAGCCAAGGCGAUAGGCUGUAUAUGCGCACCCAGACAGCAUGUACGACGAAAUGUUAACAAACAAAACA ----------------((((((((((((((....)).)------)))))..((....))..))))))((((((((...........)))))))).......((((....))))..... ( -24.80) >DroSim_CAF1 4239 112 - 1 ACUCACACAAAAUGUUAGUCCAAUUGGACUUCUUAGCU------CCAGUGAGCCAAGGGGAUAGGCUGUAUAUGCGCACCCAGACAGCAUGUACGACGAAAUGUUAACAAACAAAACA ............(((((((((....)))((((((.(((------(....)))).))))))....(.(((((((((...........))))))))).)......))))))......... ( -25.90) >consensus ACUCACACAAAAUGUUAGUCCAAUUGGACUUCUUAGCU______CCAGUGAGCCAAGGCGAUAGGCUGUAUAUGCGCACCCAGACAGCAUGUACGACGAAAUGUUAACAAACAAAACA .................((((....))))...(((((.............((((.........))))((((((((...........))))))))........)))))........... (-18.37 = -18.60 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:03 2006