Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,458,368 – 11,458,460 |
Length | 92 |
Max. P | 0.567457 |
Location | 11,458,368 – 11,458,460 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 95.87 |
Mean single sequence MFE | -20.30 |
Consensus MFE | -19.82 |
Energy contribution | -20.26 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.04 |
Structure conservation index | 0.98 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11458368 92 - 22224390 AAAAAAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG .................((.(((((((..(((.(((.......)))...((((.......))))...))).(((....)))))))))).)). ( -22.60) >DroSec_CAF1 3857 91 - 1 -GAAAAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG -................((.(((((((..(((.(((.......)))...((((.......))))...))).(((....)))))))))).)). ( -22.60) >DroSim_CAF1 3266 92 - 1 AAAAAAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG .................((.(((((((..(((.(((.......)))...((((.......))))...))).(((....)))))))))).)). ( -22.60) >DroEre_CAF1 3733 90 - 1 AAA--AAAAUCAUAUAUUCUCUCAGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG ...--............((.(((.(((..(((.(((.......)))...((((.......))))...))).(((....)))))).))).)). ( -17.00) >DroYak_CAF1 3685 91 - 1 AAA-AAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACACGCUGGAGCGAG ...-.............((.(((((....(((.(((.......)))...((((.......))))...)))..((....))...))))).)). ( -16.70) >consensus AAAAAAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG .................((.(((((((..(((.(((.......)))...((((.......))))...))).(((....)))))))))).)). (-19.82 = -20.26 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:00 2006