Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,452,675 – 11,452,782 |
Length | 107 |
Max. P | 0.902032 |
Location | 11,452,675 – 11,452,782 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 95.53 |
Mean single sequence MFE | -37.70 |
Consensus MFE | -34.18 |
Energy contribution | -35.18 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.91 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11452675 107 + 22224390 GCGUGGUGGCCAAUGCGGCUGUGCUGCAAUAACCCUCAAGUUGCAUACGGACUUGGAGUCCAUGCAACUGGUCAUCA-CUCGUCAGCUGGCUCGCCCUAUGUUAAUUG (((((((((((..((((((...))))))..........((((((((..((((.....))))))))))))))))))))-)..(((....)))..))............. ( -40.90) >DroSec_CAF1 6606 107 + 1 GCGUGGUGGCCAAUGCGGCUGUGCUGCAAUAACCCUCAAGUUGCAUACGGACUUGGAGUCCAUGCAACUGGUCAUCA-CUCGUCAGCCGGCUCGCCCUAUGUUAAUUG (((((((((((..((((((...))))))..........((((((((..((((.....))))))))))))))))))))-)..(((....)))..))............. ( -40.60) >DroSim_CAF1 6020 107 + 1 GCGUGGUGGCCAAUGCGGCUGUGCUGCAAUAACCCUCAAGUUGCAUACGGACUUGGAGUCCAUGCAACUGGUCAUCA-CUCGUCAGCCGGCUCGCCCUAUGUUAAUUG (((((((((((..((((((...))))))..........((((((((..((((.....))))))))))))))))))))-)..(((....)))..))............. ( -40.60) >DroEre_CAF1 9965 106 + 1 GCGUGGUGGCCAAUGCGGCUGUGCUGCAAUAACCCUAAACUUGCAUACGGACUUGGAGUCCAUGACACAGGUCAUCAUCUCGUCAGCCGGCUCGCCC--UGUUAAUUG (((.(((((((..((((((...))))))..............((....((((.....)))).((((..((((....)))).)))))).))).)))).--)))...... ( -31.80) >DroYak_CAF1 10137 106 + 1 GCGUGGUGGCCAAUGCGGCUGUGCUGCAAUAACCCUCAAGUUGCAUACGGACUUGGAGUCCAUGCCACUGGUCAUCAUCUCGUCAGCCGGCUCGCUC--UGUUAAUUG (((((((((((..((((((...))))))..........(((.((((..((((.....)))))))).)))))))))))....(((....))).)))..--......... ( -34.60) >consensus GCGUGGUGGCCAAUGCGGCUGUGCUGCAAUAACCCUCAAGUUGCAUACGGACUUGGAGUCCAUGCAACUGGUCAUCA_CUCGUCAGCCGGCUCGCCCUAUGUUAAUUG (((((((((((..((((((...))))))..........((((((((..((((.....))))))))))))))))))))....(((....))).)))............. (-34.18 = -35.18 + 1.00)
Location | 11,452,675 – 11,452,782 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 95.53 |
Mean single sequence MFE | -37.58 |
Consensus MFE | -32.06 |
Energy contribution | -33.46 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.85 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11452675 107 - 22224390 CAAUUAACAUAGGGCGAGCCAGCUGACGAG-UGAUGACCAGUUGCAUGGACUCCAAGUCCGUAUGCAACUUGAGGGUUAUUGCAGCACAGCCGCAUUGGCCACCACGC ...........((.(((((..((((....(-..((((((((((((((((((.....))))..))))))))....))))))..)....)))).)).))).))....... ( -38.10) >DroSec_CAF1 6606 107 - 1 CAAUUAACAUAGGGCGAGCCGGCUGACGAG-UGAUGACCAGUUGCAUGGACUCCAAGUCCGUAUGCAACUUGAGGGUUAUUGCAGCACAGCCGCAUUGGCCACCACGC ...........((.(((..((((((....(-..((((((((((((((((((.....))))..))))))))....))))))..)....))))))..))).))....... ( -42.70) >DroSim_CAF1 6020 107 - 1 CAAUUAACAUAGGGCGAGCCGGCUGACGAG-UGAUGACCAGUUGCAUGGACUCCAAGUCCGUAUGCAACUUGAGGGUUAUUGCAGCACAGCCGCAUUGGCCACCACGC ...........((.(((..((((((....(-..((((((((((((((((((.....))))..))))))))....))))))..)....))))))..))).))....... ( -42.70) >DroEre_CAF1 9965 106 - 1 CAAUUAACA--GGGCGAGCCGGCUGACGAGAUGAUGACCUGUGUCAUGGACUCCAAGUCCGUAUGCAAGUUUAGGGUUAUUGCAGCACAGCCGCAUUGGCCACCACGC .........--((.(((..((((((....(.(((((((((.(((.((((((.....))))))..)))......))))))))))....))))))..))).))....... ( -33.90) >DroYak_CAF1 10137 106 - 1 CAAUUAACA--GAGCGAGCCGGCUGACGAGAUGAUGACCAGUGGCAUGGACUCCAAGUCCGUAUGCAACUUGAGGGUUAUUGCAGCACAGCCGCAUUGGCCACCACGC .......((--(.(((.((.(((((.(.....((((((((((.((((((((.....))))..)))).)))....)))))))))))).).))))).))).......... ( -30.50) >consensus CAAUUAACAUAGGGCGAGCCGGCUGACGAG_UGAUGACCAGUUGCAUGGACUCCAAGUCCGUAUGCAACUUGAGGGUUAUUGCAGCACAGCCGCAUUGGCCACCACGC ...........((.(((..((((((..(...((((((((((((((((((((.....))))..))))))))....))))))))...).))))))..))).))....... (-32.06 = -33.46 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:54 2006