Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,451,917 – 11,452,037 |
Length | 120 |
Max. P | 0.695937 |
Location | 11,451,917 – 11,452,037 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.17 |
Mean single sequence MFE | -41.54 |
Consensus MFE | -36.68 |
Energy contribution | -37.60 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.12 |
Mean z-score | -1.26 |
Structure conservation index | 0.88 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695937 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11451917 120 + 22224390 GAAACAGGACGAGGAUGAGGGACCUCAGGAGCUGUUGGCCAGGCCCAAGGAAUAUAUUGUCAAGUUCCGCUUCCCGGAGCCAUCGCAGCUCCAGCCACCCAUUCUGGGUGUCCACAAUGU ......((((..((.((((....))))(((((((((((((.((.....(((((..........))))).....)).).))))..))))))))..))((((.....))))))))....... ( -46.60) >DroSec_CAF1 5848 120 + 1 GAAACAGGACGAGGAUGAGGGACCGCAGGAGCUGCUGGCCAGGCCCAAGGAAUACAUUGUCAAGUUCCGCUUCCCGGAGCCAUCGCAGCUCCAGCCACCCAUUCUGGGUGUCCACAAUGU ......(((((((((((.((....((.(((((((((((((.((.....(((((..........))))).....)).).))))..)))))))).))..))))))))...)))))....... ( -45.60) >DroSim_CAF1 5262 120 + 1 GAAACAGGACGAGGAUGAGGGACCGCAGGAGCUGCUGGCCAGGCCCAAGGAAUACAUUGUCAAGUUCCGCUUCCCGGAGCCAUCGCAGCUCCAGCCACCCAUUCUGGGUGUCCACAAUGU ......(((((((((((.((....((.(((((((((((((.((.....(((((..........))))).....)).).))))..)))))))).))..))))))))...)))))....... ( -45.60) >DroEre_CAF1 9207 120 + 1 GAAACUGGACGAUGAUGACGGCCCGCAGGAGCUGCUGGCCAGGCCCAAAGAAUAUAUCGUCAAGUUCCGCUUCCCAGAGCCAUCGCAGCUCCAGCCACCGAUUCUAGGUAUCCACAAUGU ....((((((((((.((((((((.((((...)))).)))).........((.....))))))......((((....)))))))))....)))))..(((.......)))........... ( -33.50) >DroYak_CAF1 9379 120 + 1 GAAACAGGACGAAGACGAAGGUCCACAGGAGCUGCUGGCCAGGCCCAAAGAAUAUAUCGUCAAGUUCCGCUUCCCAGAGCCAUCGCAGCUCCAGCCACCCAUUUUGGGUAUCCACAAUGU ......(((....(((....)))....(((((((((((((.((......((((..........))))......)).).))))..))))))))....((((.....)))).)))....... ( -36.40) >consensus GAAACAGGACGAGGAUGAGGGACCGCAGGAGCUGCUGGCCAGGCCCAAGGAAUAUAUUGUCAAGUUCCGCUUCCCGGAGCCAUCGCAGCUCCAGCCACCCAUUCUGGGUGUCCACAAUGU ......(((((.(((...(((...((.(((((((((((((.((.....(((((..........))))).....)).).))))..)))))))).))..)))..)))...)))))....... (-36.68 = -37.60 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:51 2006