Locus 4349

Sequence ID X_DroMel_CAF1
Location 11,449,693 – 11,449,801
Length 108
Max. P 0.856625
window7145

overview

Window 5

Location 11,449,693 – 11,449,801
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.69
Mean single sequence MFE -21.33
Consensus MFE -13.68
Energy contribution -13.64
Covariance contribution -0.04
Combinations/Pair 1.15
Mean z-score -2.23
Structure conservation index 0.64
SVM decision value 0.81
SVM RNA-class probability 0.856625
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11449693 108 + 22224390
UCGAUAGUCCAACAACAAAAUAUCGCGUGCAAUCAUCCCUGGCGACACAACUGGUUGUA-------CAUAUGUAUAUAGCGACAUUACACACCUACAUAUAUA----CACCUAC-AUAUU
.(((((..............))))).(((((((((....((....))....))))))))-------)...((((((((...................))))))----)).....-..... ( -18.95)
>DroSec_CAF1 3630 103 + 1
UCGAUAGUCCAACAAAAAAAUAUCGCGUGCAAUCAUCCCUGGCGACACAACUGGUUGUACAAAGUACAUAUGUAUAUAGCGAUAUUACA------------UA----CACCUAU-AUACU
..................(((((((((((((((((....((....))....)))))))))...((((....))))...))))))))...------------..----.......-..... ( -24.40)
>DroSim_CAF1 3712 103 + 1
UCGAUAGUCCAACAAAAAAAUAUCGCGUGCAAUCAUCCCUGGCGACACAACUGGUUGUACAAAGUACAUAUGUAUAUAGCGAUAUUACA------------UA----CACCUAU-AUACU
..................(((((((((((((((((....((....))....)))))))))...((((....))))...))))))))...------------..----.......-..... ( -24.40)
>DroEre_CAF1 6958 101 + 1
UCGAUAGUUCUACAAAAAAGUAUCGCGAGCAAUCAUCCCUGGCGACACAACUGGUUGUA-------CGUAUGUAUGUCGCGACUUUACA------------UACUCACAUAUAUAAUAUU
.(((((.((........)).))))).(.(((((((....((....))....))))))).-------)(((((((.((....))..))))------------)))................ ( -19.20)
>DroYak_CAF1 7166 97 + 1
UCGAUAGUCCAACAAAAAAGUAUCGCGUGCAAUCAUCCCUGGCGACACAACUGGUUGUG-------CAUAUGUAUGUCGCGAUAUUACA------------UA----CAUUUAUAAUAUU
..................(((((((((..((((((....((....))....))))))..-------)....(.....)))))))))...------------..----............. ( -19.70)
>consensus
UCGAUAGUCCAACAAAAAAAUAUCGCGUGCAAUCAUCCCUGGCGACACAACUGGUUGUA_______CAUAUGUAUAUAGCGAUAUUACA____________UA____CACCUAU_AUAUU
..................((((((((..(((((((....((....))....))))))).........(((....))).)))))))).................................. (-13.68 = -13.64 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:47 2006