Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,443,835 – 11,443,943 |
Length | 108 |
Max. P | 0.533186 |
Location | 11,443,835 – 11,443,943 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 94.38 |
Mean single sequence MFE | -28.28 |
Consensus MFE | -25.95 |
Energy contribution | -25.51 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.62 |
Structure conservation index | 0.92 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11443835 108 - 22224390 UCUUGAAAAAAAAAAAAUGUCAACGAAAUGUGUAAUACAAAUGCAGCUCUGAGUUUUGUUCUCCGUCGACAUUUCGUUGCGCCGCGUCGCGUCAUGUGGAUCGAGAAU ((((((............(.((((((((((((....(((((..((....))...))))).......).)))))))))))).((((((......)))))).)))))).. ( -27.90) >DroSec_CAF1 958 103 - 1 UCUUGAAAA---AAAAAUGUCGACGAAAUGUAUAAUACAAAUGCAGC--UGAGUUUUGUUCUCCGUUGACAUUUCGUUGCGUCGCGUCGCGUCAUGUGGAUCGAGAAU ((((((...---....(((.(((((..(((((....(((((((((((--.(((.......))).)))).))))).)))))))..))))))))........)))))).. ( -28.26) >DroSim_CAF1 5876 104 - 1 UCUUGAAAAA--AAAAAUGUCGACGAAAUGUAUAAUACAAAUGCAGC--UGAGUUUUGUUCUCCGUUGACAUUUCGUUGCGUCGCGUCGCGUCAUGUGGAUCGAGAAU ((((((....--....(((.(((((..(((((....(((((((((((--.(((.......))).)))).))))).)))))))..))))))))........)))))).. ( -28.69) >consensus UCUUGAAAAA__AAAAAUGUCGACGAAAUGUAUAAUACAAAUGCAGC__UGAGUUUUGUUCUCCGUUGACAUUUCGUUGCGUCGCGUCGCGUCAUGUGGAUCGAGAAU ((((((...........((.(((((((((((.....(((((..((....))...))))).........)))))))))))))((((((......)))))).)))))).. (-25.95 = -25.51 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:44 2006