Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,439,900 – 11,440,047 |
Length | 147 |
Max. P | 0.717850 |
Location | 11,439,900 – 11,440,007 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -22.04 |
Consensus MFE | -10.48 |
Energy contribution | -11.98 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.12 |
Mean z-score | -2.65 |
Structure conservation index | 0.48 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11439900 107 - 22224390 CUAUCUGCUAUUUUCCCAUAUCAGAAAGACUGUUAUCUGUGACAU-----AUCAAACAUGAUAUUUCAAAAAUAUCAAAAUGAUACAGUCCCCUCCGGGUUCAAG-----UUGA---ACU ...((((.(((......))).))))..((((((.(((..(((.((-----((((....)))))).))).............))))))))).......(((((...-----..))---))) ( -20.56) >DroSec_CAF1 9651 107 - 1 CUAUCAGGUAUUUUCCCAUAUCAGAAAGACUGUUAUCUCUGACAU-----AUCAAACAUGAUAUUUCAAAAAUAUCAAAAUGAUACAGUCCCCUUCGAGUUCAAG-----UUGA---ACU ......(((((......))))).(((.(((((.......(((.((-----((((....)))))).)))....((((.....)))))))))...))).(((((...-----..))---))) ( -19.90) >DroEre_CAF1 7486 110 - 1 CUAUCUGGUAUUUUCCCAUAUCAGAAGGGCUGUUAUCUGUGACAU-----AUCAAACAUGAUAUUUCAAAAAUAUCAAAAUGAUACAGUC-----CAAGUUCAAGACCCGUUCAACUAUU ...((((((((......)))))))).(((((...(..((.(((.(-----((((....(((((((.....)))))))...)))))..)))-----))..)...)).)))........... ( -25.30) >DroYak_CAF1 6206 115 - 1 CUAUCAGGUAUUUUCCCAUAUCAGAAACGCUCUUAUCUGCGACAUAUCAUAUCAAACAUGAUUUUUCAAAGAUAUCAUAAUGACACGGAC-----CAAGUUCAAGAUCCGUUUCAUUAGU .((((.(((((......))))).(((((((........)))....(((((.......))))).))))...))))...((((((.(((((.-----(........).))))).)))))).. ( -22.40) >consensus CUAUCAGGUAUUUUCCCAUAUCAGAAAGACUGUUAUCUGUGACAU_____AUCAAACAUGAUAUUUCAAAAAUAUCAAAAUGAUACAGUC_____CAAGUUCAAG_____UUGA___ACU ...((((((((......))))))))..((((((.(((...((.........)).....(((((((.....)))))))....))))))))).............................. (-10.48 = -11.98 + 1.50)
Location | 11,439,932 – 11,440,047 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -18.30 |
Consensus MFE | -10.61 |
Energy contribution | -11.92 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.08 |
Mean z-score | -2.07 |
Structure conservation index | 0.58 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11439932 115 - 22224390 GCACAGCUCAAUGAAUAAAAAUAUCAACGAAAAUGGUCAUCUAUCUGCUAUUUUCCCAUAUCAGAAAGACUGUUAUCUGUGACAU-----AUCAAACAUGAUAUUUCAAAAAUAUCAAAA .(((((......................((((((((.((......))))))))))..(((.(((.....))).))))))))....-----........(((((((.....)))))))... ( -17.90) >DroSec_CAF1 9683 114 - 1 GCACAGCUCAAUGAA-AAUAAUACCAACGAAAAUGGUCAUCUAUCAGGUAUUUUCCCAUAUCAGAAAGACUGUUAUCUCUGACAU-----AUCAAACAUGAUAUUUCAAAAAUAUCAAAA ...........(((.-............((.(((((((.(((....(((((......))))))))..))))))).))..(((.((-----((((....)))))).)))......)))... ( -15.10) >DroEre_CAF1 7521 114 - 1 GGACAGCUCAAUGAA-AACAAUAUGAACGAAAAUGGUCAUCUAUCUGGUAUUUUCCCAUAUCAGAAGGGCUGUUAUCUGUGACAU-----AUCAAACAUGAUAUUUCAAAAAUAUCAAAA .((((((((......-......((((.(......).))))...((((((((......)))))))).)))))))).....(((.((-----((((....)))))).)))............ ( -25.80) >DroYak_CAF1 6241 95 - 1 -------------------------AAAGAAAAUGCUCAUCUAUCAGGUAUUUUCCCAUAUCAGAAACGCUCUUAUCUGCGACAUAUCAUAUCAAACAUGAUUUUUCAAAGAUAUCAUAA -------------------------...(((((((((.........)))))))))..(((((.....(((........)))....(((((.......)))))........)))))..... ( -14.40) >consensus GCACAGCUCAAUGAA_AA_AAUAUCAACGAAAAUGGUCAUCUAUCAGGUAUUUUCCCAUAUCAGAAAGACUGUUAUCUGUGACAU_____AUCAAACAUGAUAUUUCAAAAAUAUCAAAA ............................((.(((((((.....((((((((......))))))))..))))))).)).....................(((((((.....)))))))... (-10.61 = -11.92 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:43 2006