Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,417,489 – 11,417,586 |
Length | 97 |
Max. P | 0.559211 |
Location | 11,417,489 – 11,417,586 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 89.48 |
Mean single sequence MFE | -29.64 |
Consensus MFE | -25.56 |
Energy contribution | -25.12 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.26 |
Mean z-score | -1.30 |
Structure conservation index | 0.86 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11417489 97 + 22224390 CCUUGAGAUCGAUGUCGGAGAGAUCACCGCUCGAUAGAUCGACGGCACUCGUGUUGCCCACGUAUUCCAGUACGUCACUGCGGCGUACGAAUUUCAU ...((((((((((((((.((.((((...........))))((((((((....).))))...((((....))))))).)).)))))).)).)))))). ( -30.00) >DroSec_CAF1 1371 97 + 1 CCUUAAGAUCGAUGUCGGAGAGAUCACCGCUCGAUAGAUCGACGGCACUCAUGUUGCCCACAUCUUCCAGUACGUCACUGCGGCGUACGGAUUUCAU ..........(((((.((.(((....(((.((((....)))))))..)))......)).))))).(((.(((((((.....))))))))))...... ( -28.00) >DroSim_CAF1 1509 97 + 1 CCUUAAGAUCGAUGUCGGAGAGAUCACCGCUCGAUAGAUCGACGGCACUCAUGUUGCCCACAUCUUCCAGUACGUCACUGCGGCGUACGGAUUUCAU ..........(((((.((.(((....(((.((((....)))))))..)))......)).))))).(((.(((((((.....))))))))))...... ( -28.00) >DroEre_CAF1 1368 97 + 1 CCUUGAGAUCAAUGUCGGAAAGAUCACCGUGCGACAGAUCGCCGACACUUAUGCAGCCCACGUUUUCCAGUACGUCACUACGGCGUACGGAUUUCAU ...(((((((..((((((...((((...........)))).))))))......................(((((((.....))))))).))))))). ( -30.20) >DroYak_CAF1 1385 97 + 1 CCUUGAGAUCGAUGUCGGAGAGAUCACCGCACGACAGAUCGUGGGCACUCAUAUUGCUCACGUUUUUCAGUACGUCACUACGGCGUACGGAUUUUAU ...(((((((...(((((.(....).))).))((.(((.((((((((.......))))))))))).)).(((((((.....))))))).))))))). ( -32.00) >consensus CCUUGAGAUCGAUGUCGGAGAGAUCACCGCUCGAUAGAUCGACGGCACUCAUGUUGCCCACGUCUUCCAGUACGUCACUGCGGCGUACGGAUUUCAU ...((((((((((((.((.(((....(((.((((....)))))))..)))......)).))))).....(((((((.....))))))).))))))). (-25.56 = -25.12 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:36 2006