Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,412,430 – 11,412,550 |
Length | 120 |
Max. P | 0.569051 |
Location | 11,412,430 – 11,412,550 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.11 |
Mean single sequence MFE | -34.72 |
Consensus MFE | -28.26 |
Energy contribution | -27.60 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.33 |
Mean z-score | -1.89 |
Structure conservation index | 0.81 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11412430 120 - 22224390 UCGGUAUUGGUGACACUAUUGCCGAUCCCCAGACCUACAACGAGAUCCAGCAGGCCAUCAAGAAGGCAAAGGACGACGUGAUAAACGUUAUCCAAAAGGCCCACAACAUGGAGCUGGAGC ((((((.(((.....))).))))))....................((((((...((((......(((...(((..((((.....))))..))).....)))......)))).)))))).. ( -38.40) >DroVir_CAF1 3655 120 - 1 UUGGCAUUGGCGACACUAUUGCCGAUCCGCAGACAUACAACGAAAUCCAGAUGGCCAUCAAGAAGGCCAAGGACGAUGUCAUCAAUGUUAUCCAGAAGGCGCACAACAUGGAACUCGAAC ..((.((((((((.....))))))))))............(((..((((..(((((........))))).(((..((((.....))))..)))...............))))..)))... ( -32.50) >DroPse_CAF1 9226 120 - 1 UCGGCAUUGGCGACACCAUUGCCGAUCCGCAGACCUACAAUGAAAUUCAGAUGGCCAUCAAGAAGGCCAAGGACGAUGUCAUCAAUGUUAUCCAGAAGGCUCACAACAUGGAACUGGAAC ((((((.(((.....))).))))))((((....((.....(((..(((...(((((........))))).(((..((((.....))))..))).)))...)))......))...)))).. ( -34.00) >DroWil_CAF1 3679 120 - 1 UUGGUAUUGGUGAUACCAUUGCUGAUCCUCAGACAUAUAACGAGAUCCAAAUGGCCAUCAAGAAGGCCAAAGACGAUGUCAUAAACGUUAUCCAAAAGGCCCAUAAUAUGGAACUGGAUC ..((((.(((.....))).))))(((((........((((((.........(((((........)))))..(((...))).....)))))).....((..((((...))))..))))))) ( -30.10) >DroMoj_CAF1 3719 120 - 1 UUGGCAUCGGCGACACCAUUGCCGAUCCGCAGACCUACAACGAGAUCCAAAUGGCCAUCAAGAAGGCCAAGGACGAUGUCAUCAACGUCAUUCAAAAGGCCCACAACAUGGAGCUGGAGC ..((.((((((((.....)))))))))).................(((...(((((........)))))..((((.((....)).))))........((((((.....))).)))))).. ( -36.00) >DroPer_CAF1 9242 120 - 1 UCGGCAUUGGCGACACCAUUGCCGAUCCGCAGACCUACAACGAAAUUCAGAUGGCCAUCAAGAAGGCCAAGGAUGAUGUCAUCAAUGUUAUCCAGAAGGCCCACAACAUGGAACUGGAAC ((((((.(((.....))).))))))(((.....(((.(.............(((((........))))).(((((((((.....))))))))).).))).(((.....)))....))).. ( -37.30) >consensus UCGGCAUUGGCGACACCAUUGCCGAUCCGCAGACCUACAACGAAAUCCAGAUGGCCAUCAAGAAGGCCAAGGACGAUGUCAUCAACGUUAUCCAAAAGGCCCACAACAUGGAACUGGAAC ((((((.(((.....))).))))))....................(((((....((((......((((..(((.(((((.....))))).)))....))))......))))..))))).. (-28.26 = -27.60 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:35 2006