Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,262,800 – 1,262,913 |
Length | 113 |
Max. P | 0.840958 |
Location | 1,262,800 – 1,262,913 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.47 |
Mean single sequence MFE | -34.62 |
Consensus MFE | -24.76 |
Energy contribution | -26.82 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.15 |
Mean z-score | -2.00 |
Structure conservation index | 0.72 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1262800 113 - 22224390 UUAUGACAAGUCCUAAACGUAGGACG-------GUGGAAGAGGGACGAGUGACGGGGGAUGAGCCUUGUGGUAUCUUGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA ..(((((..((((((....))))))(-------(((((((...((((((.(.(((((((.(((((....))).))......)))))))).)))))).))))))))))))).......... ( -36.80) >DroSec_CAF1 16924 120 - 1 UUAUGACAAGUCCUAAACGGAGGACGGCUGACGGAGGAAGAGGGACGAGGGACUGGGGAUGAGCCUUGUGGUAUCUUGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA ..((((((((((((......))))).......(((((..(((((..((((((.(.(((((..(((....)))))))).).))))))..)))))....))))).))))))).......... ( -37.80) >DroEre_CAF1 18504 98 - 1 UUAUGGCAAGUCCUCAACGGAGG--------------GCGAGGGACG--------AGGAUGAGCCUUGUGGUAUCUAGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA ....(((((((((((....))))--------------))(((((..(--------((((.(((((....))).))......)))))..))))).)))))..................... ( -28.30) >DroYak_CAF1 20503 113 - 1 UUAUGACAAGUCCUAAACGGAGGA------ACGAAGGACGAGGGACGGGAGAU-GGGGAAGAGCCUUGUGGUAUCUUGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA ..(((((((.((((......))))------..((((((((((((..(((((((-.((((...(((....))).)))).)))))))...)))))))..))))).))))))).......... ( -35.60) >consensus UUAUGACAAGUCCUAAACGGAGGA_________GAGGAAGAGGGACGAG_GAC_GGGGAUGAGCCUUGUGGUAUCUUGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA ..(((((((((((((....))))))..............(((.((((((((...(((((.(((((....))).))......)))))..)))))))).)))...))))))).......... (-24.76 = -26.82 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:29 2006