Locus 4338

Sequence ID X_DroMel_CAF1
Location 11,408,430 – 11,408,529
Length 99
Max. P 0.999097
window7125

overview

Window 5

Location 11,408,430 – 11,408,529
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.90
Mean single sequence MFE -25.32
Consensus MFE -9.03
Energy contribution -9.72
Covariance contribution 0.69
Combinations/Pair 1.20
Mean z-score -2.84
Structure conservation index 0.36
SVM decision value 3.37
SVM RNA-class probability 0.999097
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11408430 99 - 22224390
CCUACAGUUUCGUAUUUGGUUUUGUGGUAAAGUAAACAUUUUGAAUUGUUUGCGUUAACCAGAAAAGCGAAUUCG-----------AAGCCAUUUAUAUUUGCACAAAUU----------
......((((((.(((((.((((.((((...(((((((........)))))))....)))).)))).))))).))-----------))))....................---------- ( -27.90)
>DroSec_CAF1 1519 99 - 1
CGUGCAGUUUCGUAUUUGGUUUUGUGGUAAAGUAAACAAUUUGAAUUGUUUGCGUUUAACAGAAAAGCGAAUUCG-----------AAGCCAUUUAUAUUUGCACAAAUU----------
.(((((((((((.(((((.((((.((.(((((((((((((....))))))))).)))).)).)))).))))).))-----------))))..........))))).....---------- ( -31.60)
>DroSim_CAF1 2446 99 - 1
CGUGCAGUUUCGUAUUUGGUUUUGUGGUAAAGUAAACAAUUUGAAUUGUUUGCGUUUAACAAAAAAGCGAAUUCG-----------AAGCCAUUUAUAUUUGCACAAAUU----------
.(((((((((((.(((((.((((.((.(((((((((((((....))))))))).)))).)).)))).))))).))-----------))))..........))))).....---------- ( -29.50)
>DroEre_CAF1 1404 119 - 1
CAUACAGUUAUGGAUUUGGUUG-CUGGCAAAGUGAACAUAUUGAGUUGUUUGCGCUUAACAGAAAAUUAAAUUAGAUUUAAAUUUUAAGCCAUUUCUAUUUGCACAAAUUGAUUAACAAA
......((.(((((..(((((.-(((..((.(..((((........))))..)..))..)))((((((.((......)).)))))).)))))..)))))..))................. ( -21.80)
>DroYak_CAF1 2510 78 - 1
CAUACAGUUUUGAAUUUGGUUU-CUGGUUAA--------------------GCGUUUAACAGAAAAGUGAAUUCG-----------AAGCCCUUUCUACUUGCACAAAUU----------
......((((((((((((.(((-(((.((((--------------------....))))))))))..))))))))-----------))))....................---------- ( -15.80)
>consensus
CAUACAGUUUCGUAUUUGGUUUUGUGGUAAAGUAAACAAUUUGAAUUGUUUGCGUUUAACAGAAAAGCGAAUUCG___________AAGCCAUUUAUAUUUGCACAAAUU__________
..........((.(((((.((((.((.....(((((((........)))))))......)).)))).))))).))............................................. ( -9.03 =  -9.72 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:28 2006