Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,407,609 – 11,407,703 |
Length | 94 |
Max. P | 0.811513 |
Location | 11,407,609 – 11,407,703 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 80.24 |
Mean single sequence MFE | -31.00 |
Consensus MFE | -21.15 |
Energy contribution | -21.90 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.12 |
Mean z-score | -1.78 |
Structure conservation index | 0.68 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11407609 94 - 22224390 UAGCGGAGAAUAUCGAUU---UGCAACUUACCCACAAAGUUGCCGAUAAAGGCU-AUGCCCGUGCCAAUGGCAUUGUAUCCAUAGGUGUGGGCACCGC ..((((....(((((...---.(((((((.......))))))))))))......-.((((((..((.((((........)))).))..)))))))))) ( -37.60) >DroPse_CAF1 636 97 - 1 AGCCGGAGAAUAUGUAAUAUAGCUAGCUCACCCCCGUAGUUGCCGAUGAAGGCA-AUGCCCGUGCCAUUGGCGUUGUAGCCGUAAGUGUGGGCGCCGC ...(((................................((((((......))))-))(((((..(...((((......))))...)..))))).))). ( -31.00) >DroSec_CAF1 627 95 - 1 NNNNNAAGAAUAUCUAUU---UGCAACUUACCCACAAAGUUGCCGAUAAAGGCUAAUGCCCGUGCCAAUGGCAUUGUAUCCAUAGGUGUGGGCACCGC ..............((((---.(((((((.......))))))).))))..((....((((((..((.((((........)))).))..)))))))).. ( -30.90) >DroEre_CAF1 492 94 - 1 UAGAGGAGAAUACCAACU---UGUUACUUACCCACAAAGUUGCCGAUAAAGGCU-AUGCCCGUGCCAUUGCCAUUGUAUCCGUAGGUGUGGGCUCCGC ....((((((((......---)))).....((((((...((((.((((..(((.-(((.......))).)))....)))).)))).)))))))))).. ( -25.50) >DroYak_CAF1 1605 94 - 1 UAGAGGAUAAUAUGAACU---AACAACUUACCCACAAAGUUGCCGAUAAAGGCU-AUGCCCGUGCCAUUGGCAUUGUAUCCAUAGGUGUGGGCUCCUC ..(((((...........---...(((((.......)))))(((......))).-..(((((..((..(((........)))..))..)))))))))) ( -29.30) >DroPer_CAF1 416 97 - 1 AGCCGGAGUAUAUGUAAUAUAGCUAGCUCACCCCCGUAGUUGCCGAUGAAGGCA-AUGCCCGUGCCAUUGGCGUUGUAGCCGUAAGUGUGGGCGCCGC .((..((((....((......))..)))).........((((((......))))-))(((((..(...((((......))))...)..)))))))... ( -31.70) >consensus UAGCGGAGAAUAUCUAAU___UGCAACUUACCCACAAAGUUGCCGAUAAAGGCU_AUGCCCGUGCCAUUGGCAUUGUAUCCAUAGGUGUGGGCACCGC ...(((...................................(((......)))....(((((..((..(((........)))..))..))))).))). (-21.15 = -21.90 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:27 2006