Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,406,785 – 11,406,887 |
Length | 102 |
Max. P | 0.938532 |
Location | 11,406,785 – 11,406,887 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.39 |
Mean single sequence MFE | -21.87 |
Consensus MFE | -15.08 |
Energy contribution | -14.53 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.18 |
Mean z-score | -1.44 |
Structure conservation index | 0.69 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11406785 102 - 22224390 UGCUUCCCUAGAAGCAGUAAG-AUUUGUGAUAUGU-----ACACACGAAUACUAACAGUUAA------------ACUAAAUUAAUGAUUAGCUGAAAGUCUCGCGAGAAGUUCACUGAUA ((((((....))))))((.((-(((((((......-----...))))))).)).))......------------............(((((.((((..(((....)))..))))))))). ( -23.10) >DroSim_CAF1 796 119 - 1 UGCUUCCCCAGAAGCAGUAAA-AUAUGUGAUAUGUACUGUACACACAAAUACUAACUAUUAACUAACUAAUAAGUCUAAUCCAAUGAUUAGCUGAAAGUCUCGCGAGAAGUUCGCUGAUA .(((((....)))))((((..-...((((.(((.....)))))))....))))...(((((......)))))..............((((((.(((..(((....)))..))))))))). ( -21.60) >DroYak_CAF1 725 107 - 1 UGCUCCUACAGAGGCAAUAAACAAAUGUGAAAUGCAC-AUACAUAGAAAUACUGGGAAUCAA------------UCUAAUCCACAGAUUAGCUGAAAGUCUCUAGAGACGUUUACUGAUA (((..(....)..)))........(((((.....)))-))...........((((((.....------------.....))).)))(((((.((((.((((....)))).))))))))). ( -20.90) >consensus UGCUUCCCCAGAAGCAGUAAA_AUAUGUGAUAUGUAC__UACACACAAAUACUAACAAUUAA____________UCUAAUCCAAUGAUUAGCUGAAAGUCUCGCGAGAAGUUCACUGAUA ((((((....)))))).........((((............)))).........................................(((((.((((..(((....)))..))))))))). (-15.08 = -14.53 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:26 2006