Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,405,995 – 11,406,147 |
Length | 152 |
Max. P | 0.975784 |
Location | 11,405,995 – 11,406,107 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.77 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -22.76 |
Energy contribution | -23.10 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.07 |
Mean z-score | -1.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693069 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11405995 112 + 22224390 CAAAAUAGAAUGAAUGAAUGAAU-----AAAAA-AAUGCAUCCAGU-GGUU-AGCGUAAUGCAUUUGCAAUGCGGAUCGCCUUCGGUGGAAAACCUUAAGGCAGAGACAUGCAAAUGCAA .......................-----.....-.((((..((...-))..-.))))..((((((((((....(..(((((((.(((.....)))..))))).))..).)))))))))). ( -27.50) >DroSim_CAF1 155 114 + 1 CAAAAUAGAAUGAAUGAAUGAAU----GAAAAA-AAUGCAUGCAGU-GCUUAAGCGUAAUGCAUUUGCAAUGCGGAUCGCCUUCGGAGGAAAACCUUAAGGCAGAGACAUGCAAAUGCAA .......................----......-..((((((((..-.(((...((((.(((....))).))))....(((((..((((....))))))))).)))...))))..)))). ( -28.30) >DroYak_CAF1 148 112 + 1 CA-------AUGAAUGAAUGAGAAAUUGAAGCGCAUCGCAUCCAGUUGGUGUAGCGUAAUGCAUUUGCAAUGCGGAUCGCCUUCGGAGGAGAACCUUAAGCCAGAGACAUGCAAAUGCC- ..-------.....................((((...(((((.....))))).))))...(((((((((..(((...)))((..((..(((...)))...))..))...))))))))).- ( -25.90) >consensus CAAAAUAGAAUGAAUGAAUGAAU____GAAAAA_AAUGCAUCCAGU_GGUU_AGCGUAAUGCAUUUGCAAUGCGGAUCGCCUUCGGAGGAAAACCUUAAGGCAGAGACAUGCAAAUGCAA ...................................((((..((....))....))))...(((((((((....(..(((((((..((((....))))))))).))..).))))))))).. (-22.76 = -23.10 + 0.34)
Location | 11,405,995 – 11,406,107 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.77 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -23.62 |
Energy contribution | -23.73 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -2.52 |
Structure conservation index | 0.85 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.975784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11405995 112 - 22224390 UUGCAUUUGCAUGUCUCUGCCUUAAGGUUUUCCACCGAAGGCGAUCCGCAUUGCAAAUGCAUUACGCU-AACC-ACUGGAUGCAUU-UUUUU-----AUUCAUUCAUUCAUUCUAUUUUG .(((((((((((((...((((((..(((.....))).))))))....))).)))))))))).......-....-..((((((.((.-.....-----)).)))))).............. ( -28.50) >DroSim_CAF1 155 114 - 1 UUGCAUUUGCAUGUCUCUGCCUUAAGGUUUUCCUCCGAAGGCGAUCCGCAUUGCAAAUGCAUUACGCUUAAGC-ACUGCAUGCAUU-UUUUUC----AUUCAUUCAUUCAUUCUAUUUUG .(((((((((((((...((((((.(((....)))...))))))....))).))))))))))..........((-(.....)))...-......----....................... ( -27.50) >DroYak_CAF1 148 112 - 1 -GGCAUUUGCAUGUCUCUGGCUUAAGGUUCUCCUCCGAAGGCGAUCCGCAUUGCAAAUGCAUUACGCUACACCAACUGGAUGCGAUGCGCUUCAAUUUCUCAUUCAUUCAU-------UG -.((....))..((((.(((....(((....)))))).))))((..(((((((((...((.....))....((....)).)))))))))..))..................-------.. ( -27.70) >consensus UUGCAUUUGCAUGUCUCUGCCUUAAGGUUUUCCUCCGAAGGCGAUCCGCAUUGCAAAUGCAUUACGCU_AACC_ACUGGAUGCAUU_UUUUUC____AUUCAUUCAUUCAUUCUAUUUUG ..((((((((((((...((((((.(((....)))...))))))....))).)))))))))................((((((.((............)).)))))).............. (-23.62 = -23.73 + 0.11)
Location | 11,406,029 – 11,406,147 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.20 |
Mean single sequence MFE | -35.47 |
Consensus MFE | -27.53 |
Energy contribution | -27.53 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -2.27 |
Structure conservation index | 0.78 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11406029 118 - 22224390 AUGUGUGUGGUGUCUAUAAAUUGUGAAUUACUCAUGGCAUUUGCAUUUGCAUGUCUCUGCCUUAAGGUUUUCCACCGAAGGCGAUCCGCAUUGCAAAUGCAUUACGCU-AACC-ACUGGA ..(((..((((((.........((((.....)))).(((((((((..(((..(((...(((((..(((.....))).))))))))..))).)))))))))...)))))-)..)-)).... ( -36.60) >DroSim_CAF1 190 117 - 1 AUGA--GUGGUGUCUAUAAAUUGUGAAUUACUCAUGGCAUUUGCAUUUGCAUGUCUCUGCCUUAAGGUUUUCCUCCGAAGGCGAUCCGCAUUGCAAAUGCAUUACGCUUAAGC-ACUGCA ((((--(((((..(........)...))))))))).(((..(((((((((((((...((((((.(((....)))...))))))....))).))))))))))....((....))-..))). ( -38.10) >DroYak_CAF1 181 116 - 1 AUGU--GCAGUGUCUAUAAAUUGUGAAUUACUCAUGGCG--GGCAUUUGCAUGUCUCUGGCUUAAGGUUCUCCUCCGAAGGCGAUCCGCAUUGCAAAUGCAUUACGCUACACCAACUGGA ....--.((((...........((((.....))))((((--.((((((((((((...(.((((..((.......))..)))).)...))).)))))))))....))))......)))).. ( -31.70) >consensus AUGU__GUGGUGUCUAUAAAUUGUGAAUUACUCAUGGCAUUUGCAUUUGCAUGUCUCUGCCUUAAGGUUUUCCUCCGAAGGCGAUCCGCAUUGCAAAUGCAUUACGCU_AACC_ACUGGA ........(((((.......(..(((.....)))..).....((((((((((((...((((((.(((....)))...))))))....))).)))))))))...)))))...((....)). (-27.53 = -27.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:25 2006