Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,399,090 – 11,399,190 |
Length | 100 |
Max. P | 0.638564 |
Location | 11,399,090 – 11,399,190 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -22.05 |
Consensus MFE | -20.45 |
Energy contribution | -20.70 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.93 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11399090 100 - 22224390 UAAUGUAUUUAGUUGUAUAAUUUAUGCUAGGCCAAAGGGCUUACUUGCAUGCCUUGUGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA ..(((((.(((((((((((...)))))..((((..(((((..........)))))...))))...))))))....))))).(((((((...))))))).. ( -23.00) >DroSim_CAF1 23634 100 - 1 UAAUGUAUUUAGUUGUAUAAUUUAUGCUAGGCCAAAGGACUUACUUGCUCGCCUUGUGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA ..(((((.(((((((((((...)))))..((((.((((.............))))...))))...))))))....))))).(((((((...))))))).. ( -18.52) >DroEre_CAF1 58480 100 - 1 UAAUGUAUUUAGUUGUAUAAUUUAUGCUAGGCCAAAGGGCUUACUUGCUUGCCUUGCGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA ..(((((.(((((((((((...)))))..((((..(((((..........)))))...))))...))))))....))))).(((((((...))))))).. ( -23.00) >DroYak_CAF1 57822 96 - 1 UAAUGU----AGUUGUAUAAUUUAUGCUAGGCCAAAGGGCUUACUUGUUUGCCUUGUGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA ..((((----((.(((.((((((......((((..(((((..(....)..)))))...))))..))))))))).)))))).(((((((...))))))).. ( -23.70) >consensus UAAUGUAUUUAGUUGUAUAAUUUAUGCUAGGCCAAAGGGCUUACUUGCUUGCCUUGUGGGCCAAAAAUUGACAUUUAUAUAUUCGUUGAAACAAUGAACA .(((((........(((((...)))))..((((..(((((..........)))))...))))........)))))......(((((((...))))))).. (-20.45 = -20.70 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:15 2006