Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,261,708 – 1,261,827 |
Length | 119 |
Max. P | 0.872155 |
Location | 1,261,708 – 1,261,827 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 78.16 |
Mean single sequence MFE | -36.19 |
Consensus MFE | -25.03 |
Energy contribution | -26.16 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.69 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1261708 119 + 22224390 AGACGGCUGCUGACAUUUCGUUUCGAUUGAACAGUUGCUAUUGCUAAGUGCCGCCUCGGGCGGUGUUACCAACCCCCAACACCCCUCCCCGUCCACCAGUUUCGGGCGGCACUUUCUCC .((..((.((((.....(((...))).....)))).))..))...(((((((((((((((.((((((..........))))))....))))............)))))))))))..... ( -37.90) >DroSec_CAF1 15886 116 + 1 AGACGGCUGCUGACAUUUCGCUUCGAUUGAACAGUUGCUAUUGCUAAGUGCCGCCUCGGGCGGUGUUAGCAACCCCCAACCCCC---CGUUUCCACCCGUUUCAGGAGGCACUUCGUCC .((((((.((((.....(((...))).....)))).)).......(((((((.(((..(((((((..(((..............---.)))..)).)))))..))).))))))))))). ( -36.76) >DroEre_CAF1 17490 107 + 1 AGCCGCCUGCUGACAUUUCGCUUCGCUCGAACAGUUGCUAUUGCUAAGUGCCGCCUCCGGCGGUGCUACC----UCCACCUCCC---CCC-----GCCAUUUCAGGCGGCACUUUCUCC .((((((((..(((..((((.......))))..)))((....))..((..(((((...)))))..))...----..........---...-----.......))))))))......... ( -34.50) >DroYak_CAF1 19435 94 + 1 AGACGGCUGCUGACAUUUCGCUUCGCUUGAACAGUUGCUACUGCUAAGUGCCGCCUCGGGCGGUGUUUCC----C---------------------CCAUUUGAGGCGGCACUUUCUCC ....(((.((((....((((.......)))))))).)))......(((((((((((((((.((.....))----)---------------------))....))))))))))))..... ( -35.60) >consensus AGACGGCUGCUGACAUUUCGCUUCGAUUGAACAGUUGCUAUUGCUAAGUGCCGCCUCGGGCGGUGUUACC____CCCAAC_CCC___CCC_____CCCAUUUCAGGCGGCACUUUCUCC ....(((.((((....((((.......)))))))).)))......(((((((((((.((((((.................................)))))).)))))))))))..... (-25.03 = -26.16 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:28 2006