Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,398,180 – 11,398,318 |
Length | 138 |
Max. P | 0.591835 |
Location | 11,398,180 – 11,398,287 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 92.83 |
Mean single sequence MFE | -37.84 |
Consensus MFE | -35.16 |
Energy contribution | -35.76 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.11 |
Structure conservation index | 0.93 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11398180 107 - 22224390 ------GA---GGUGGUGUCGUAUUAGUGGUCGUAGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAAGCGAUGAAAGAAACUUUUGGCAUUGCGGCUGGCCCGGCUG ------.(---(.(((.(((......(((.(.(((...((((((((.(....).)))))))).)))).)))((...((((((..(((....)))..))))))..)))))))).)). ( -33.90) >DroSec_CAF1 51361 107 - 1 ------GA---UGUGGUGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAACCGAUGAAAGAAACUUUUGGCAUUGCGGCUGGCCCGGCUG ------..---.(..((((((.(((..((((((((((....)))))))).(((((((....))).)))).))..))))...(((((...))))))))))..)(((((...))))). ( -34.80) >DroSim_CAF1 22704 107 - 1 ------GA---UGUGGUGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAAGCGAUGAAAGAAACUUUUGGCAUUGCGGCUGGCCCGGCUG ------..---......((((.((((((.((((((((....)))))))).(((((((....))).)))).......((((((..(((....)))..)))))).)))))).)))).. ( -38.50) >DroEre_CAF1 57601 116 - 1 GAGGCGGAGGAGGGUGCGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAAGCGAUGAAAGAAACUUUUGGCAUUGCGGCUGGCCCGGCUG .((.(((.....(.(((((.((((((((.((((((((....)))))))).)))))....)))))))).).(((...((((((..(((....)))..))))))..)))..))).)). ( -42.20) >DroYak_CAF1 56969 110 - 1 ------GAGGGUGAUGCGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAAGCGAUGAAAGAAACUUUUGGCAUUGCGGCUGGCCCGGCUG ------..((((..(((((.((((((((.((((((((....)))))))).)))))....))))))))...(((...((((((..(((....)))..))))))..)))))))..... ( -39.80) >consensus ______GA___UGUGGUGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAAGCGAUGAAAGAAACUUUUGGCAUUGCGGCUGGCCCGGCUG .................((((.((((((.((((((((....)))))))).(((((((....))).)))).......((((((..(((....)))..)))))).)))))).)))).. (-35.16 = -35.76 + 0.60)
Location | 11,398,220 – 11,398,318 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 88.12 |
Mean single sequence MFE | -37.74 |
Consensus MFE | -29.14 |
Energy contribution | -29.74 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.77 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529499 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11398220 98 - 22224390 GCCUUCUGCCAGUGGGCGCUGGUCGGGGGAG---------------GA---GGUGGUGUCGUAUUAGUGGUCGUAGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAA .(((((.((((((....)))))).)))))..---------------..---.(((.(((.((((((.((((.((.((((...)))).)).)))).))).)))..))).)))..... ( -32.40) >DroSec_CAF1 51401 98 - 1 GCCUUCUGCCAGUGGGCGGUGGUCGGGGGAG---------------GA---UGUGGUGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAA .(((((.((((.(....).)))).)))))..---------------..---((((.((.(((((((((.((((((((....)))))))).))))......))))))).)))).... ( -37.30) >DroSim_CAF1 22744 98 - 1 GCCUUCUGCCAGUGGGCGGUGGUUGGGGGAG---------------GA---UGUGGUGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAA .(((((.((((.(....).)))).)))))..---------------..---((((.((.(((((((((.((((((((....)))))))).))))......))))))).)))).... ( -37.30) >DroEre_CAF1 57641 116 - 1 UCCUUCUGCCAGUGGGCGGUGGUCGGGGGAGGCGGAGGCGGAGGCGGAGGAGGGUGCGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAA ((((.(((((.....((..(.(((......))).)..))...)))))))))..((((..(((((((((.((((((((....)))))))).))))......)))))..))))..... ( -42.60) >DroYak_CAF1 57009 101 - 1 UCCUUCUGCCAGUGGGCGGUGGUCGGGGGAG---------------GAGGGUGAUGCGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAA .((((((.((....(((....)))..)).))---------------))))(((.(((((.((((((((.((((((((....)))))))).)))))....)))))))).)))..... ( -39.10) >consensus GCCUUCUGCCAGUGGGCGGUGGUCGGGGGAG_______________GA___UGUGGUGUCGUGUUAGUGGUCGUGGUGGUAGCCAUGGCAGCUGGUGGUUACAUGCAGCACAGAAA .(((((.((((.(....).)))).)))))..........................((((.((..((((.((((((((....)))))))).))))(((....))))).))))..... (-29.14 = -29.74 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:14 2006