Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,395,120 – 11,395,334 |
Length | 214 |
Max. P | 0.830476 |
Location | 11,395,120 – 11,395,217 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 90.85 |
Mean single sequence MFE | -31.96 |
Consensus MFE | -25.04 |
Energy contribution | -24.88 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.81 |
Structure conservation index | 0.78 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11395120 97 - 22224390 GC-----GAUGCGAUCCGGCAGCCAGAACAGGAGCCAGAGCCAACCCAGAGCGGUGGCCAGAGGAAAGAAGCUUUGGUGACAAAGCUGGCAUACCAAAUAGU ..-----.((((..((((((..((......)).))).(.((((.((......)))))))...)))....(((((((....))))))).)))).......... ( -33.10) >DroSec_CAF1 48394 97 - 1 GC-----GAUGCGAUCCGGCAGCCAGAACAGGAGCCAGAGCCAACCCAGAGCGGUGGCCAGAGGAAAGAAGCUUUGGUGACAAAGCUGGCAUACCAAAUACU ..-----.((((..((((((..((......)).))).(.((((.((......)))))))...)))....(((((((....))))))).)))).......... ( -33.10) >DroSim_CAF1 19860 97 - 1 GC-----GAUGCGAUCCGGCAGCCAGAACAGGAGCCAGAGCCAACCCAGAGCGGUGGCCAGAGGAAAGAAGCUUUGGUGACAAAGCUGGCAUACCAAAUACU ..-----.((((..((((((..((......)).))).(.((((.((......)))))))...)))....(((((((....))))))).)))).......... ( -33.10) >DroEre_CAF1 54537 91 - 1 GC-----GAUGCGAUGCGGCAGCCAGAACAGGAG------CCAACCCAGAGCGGUGGCCGGGGAAAAGAAGCUUUGGUGACAAAGCUGGCAUACCAAAUAGU ..-----..((..(((((((..((......)).)------))..(((.(.((....))).)))......(((((((....))))))).))))..))...... ( -28.70) >DroYak_CAF1 53896 96 - 1 GCGAGCCGAUGCGAUGCGGCAGCCAGAACAGGAG------CCAAGCCAGAGCGGUGGCCGGAGGAAAGAGGCUUUGGUGACAAAGCUGGCAUACCAAAUAGU ....((((........)))).(((.......(.(------(((.((....))..)))))..........(((((((....))))))))))............ ( -31.80) >consensus GC_____GAUGCGAUCCGGCAGCCAGAACAGGAGCCAGAGCCAACCCAGAGCGGUGGCCAGAGGAAAGAAGCUUUGGUGACAAAGCUGGCAUACCAAAUAGU ........((((.....(((.(((.(..(.((.............)).)..)))).)))..........(((((((....))))))).)))).......... (-25.04 = -24.88 + -0.16)
Location | 11,395,217 – 11,395,334 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 91.88 |
Mean single sequence MFE | -19.67 |
Consensus MFE | -16.44 |
Energy contribution | -17.44 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.84 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11395217 117 - 22224390 UGACAAAGUACGUGCCAUAAUGAAGCAAUUGCGCUUCCGGCAACAGGCAAACUACUAAAACAACUAAAACAGCAACACUACGAAGUAUUGCCAACACCCAAAGCGACACAACAACUG ......((((..((((.....(((((......))))).(....).))))...))))...............((((.(((....))).)))).......................... ( -21.50) >DroSec_CAF1 48491 116 - 1 UGACAAAGUACGUGCCAUAAUGAAGCAAUUGCGCUUCCGGCAACAGGCAAACUACUAAAACAACUAAAACAGCAACACUACGA-GUAUUGCCAACACCCGAAGCGACACAACAACUG ...........(((.(........((....))(((((.((.....((((((((..........((.....))..........)-)).)))))....)).)))))).)))........ ( -20.65) >DroSim_CAF1 19957 116 - 1 UGACAAAGUACGUGCCAUAAUGAAGCAAUUGCGCUUCCUGCUACAGGCAAACUACUAAAACAACUAAAACAGCAACACUACGA-GUAUUGCCAACACCCAAAGCGACACAACAACUG ......((((..((((.....(((((......)))))........))))...))))...............((((.((.....-)).)))).......................... ( -16.92) >DroEre_CAF1 54628 109 - 1 UGACAAAGUACGUGCCAUAAUGAAGCAAUUGCGCUUCCGGCAACAGGCAAACUACUAA-ACAACUAAAACAGCAACGCU-------AUUGCCAACACUUAAAGCAGCAGAACCACUG ......((((..((((.....(((((......))))).(....).))))...))))..-..........(((.....((-------.((((...........)))).)).....))) ( -20.80) >DroYak_CAF1 53992 109 - 1 UGACAAAGUACGUGCCAUAAUGAAGCAAUUGCGCUUCCGGCAACAGGCAAACUACUAA-ACAACUAAAACAGCAACGCU-------AUUGCCAACACUUAAAGCAACACAACAACUG ......((((..((((.....(((((......))))).(....).))))...))))..-............((((....-------.)))).......................... ( -18.50) >consensus UGACAAAGUACGUGCCAUAAUGAAGCAAUUGCGCUUCCGGCAACAGGCAAACUACUAAAACAACUAAAACAGCAACACUACGA_GUAUUGCCAACACCCAAAGCGACACAACAACUG ......((((..((((.....(((((......))))).(....).))))...))))...............((((.((......)).)))).......................... (-16.44 = -17.44 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:11 2006