Locus 4324

Sequence ID X_DroMel_CAF1
Location 11,389,779 – 11,389,884
Length 105
Max. P 0.950665
window7102

overview

Window 2

Location 11,389,779 – 11,389,884
Length 105
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 95.71
Mean single sequence MFE -32.52
Consensus MFE -29.51
Energy contribution -30.45
Covariance contribution 0.94
Combinations/Pair 1.08
Mean z-score -2.37
Structure conservation index 0.91
SVM decision value 1.40
SVM RNA-class probability 0.950665
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11389779 105 - 22224390
UACAGCAGCGCAUGUUCUCUCAGUGUGCUGGAUUGCUUCUAAUGUGACAAUUAAAUUUGUCAGGAAAUCCAAGCAGUGCGAAGAAUGUGUGCAAGCAGUGCAUUG
(((.((.((((((((((((.((.(((..((((((...(((....((((((......))))))))))))))).))).)).).)))))))))))..)).)))..... ( -34.90)
>DroSec_CAF1 43284 105 - 1
UACAGCAUCGCAUGUUCUCUCAGUGUGCUGGAUUGCUUCUAAUGUGACAAUUAAAUUUGUCAGGAAAUCCAAGCAGUGCGAAGAAUGUGUGCAAGCAGUGCAUUG
....(((((((((((((((.((.(((..((((((...(((....((((((......))))))))))))))).))).)).).))))))))))......)))).... ( -32.30)
>DroEre_CAF1 49403 105 - 1
UACAGCUGCGACUGUUCUCUCAGUGUGCUGGAUUGCUUCUAAUGUGACAAUUAAAUUUGUCAGGAAAUCCAAGCAUUGCGAAGAAUGUGUGCAAGCAGUGCAUUG
(((.((((((...((((((.((((((..((((((...(((....((((((......))))))))))))))).)))))).).)))))...))).))).)))..... ( -31.30)
>DroYak_CAF1 48639 105 - 1
UAUAGCUGCGCUUGUUUUUUCAGUGUGCUGGAUUGCUUCUAAUGUGACAAUUAAAUUUGUCAGGAAAUCCAAGCAGUGCGAAGAAUGUGUGCAAGCAGUGCAUUG
....(((((((.((((((((((.(((..((((((...(((....((((((......))))))))))))))).))).)).)))))))).)))).)))......... ( -31.60)
>consensus
UACAGCAGCGCAUGUUCUCUCAGUGUGCUGGAUUGCUUCUAAUGUGACAAUUAAAUUUGUCAGGAAAUCCAAGCAGUGCGAAGAAUGUGUGCAAGCAGUGCAUUG
(((.(((((((((((((((.((.(((..((((((...(((....((((((......))))))))))))))).))).)).).))))))))))).))).)))..... (-29.51 = -30.45 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:06 2006