Locus 4323

Sequence ID X_DroMel_CAF1
Location 11,389,500 – 11,389,602
Length 102
Max. P 0.605872
window7101

overview

Window 1

Location 11,389,500 – 11,389,602
Length 102
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 78.57
Mean single sequence MFE -20.34
Consensus MFE -13.62
Energy contribution -13.18
Covariance contribution -0.44
Combinations/Pair 1.13
Mean z-score -1.55
Structure conservation index 0.67
SVM decision value 0.15
SVM RNA-class probability 0.605872
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11389500 102 + 22224390
AUAACAAGAGGCUUGUCUCUCCCCAUCCUCCGCCUCCAGGGGCCCCAUCCUCUGUGGCUCCAUCCCUCCAUA--UCACCAUCCAACGUUGCAGCAUACUGGAUG
.......(((((...................)))))..((((((.((.....)).))))))...........--....((((((..((........)))))))) ( -23.61)
>DroSec_CAF1 43015 100 + 1
AUAACAAGAGGCUUGUC--UCCCCGUCCUCCGCCUCCAGGGACCCCAUCCUCUGUGCCUCCAUCCCUCCAUU--CCACCAUCCUCCUUCCCAGCACUGUGGAUG
.......((((....))--))...(((((.........)))))..(((((.(.((((...............--..................)))).).))))) ( -17.81)
>DroYak_CAF1 48360 95 + 1
AUAACAAGAGGCUUGUC--UCCUCAUCCUCCGCCUCCAGGGAUCCCAUCCCAU-------CCUCCCUUCAUCUCCCACCAUUCUCGUGCCCAGCACUGUGGAUG
.......((((......--.))))....(((((.....(((((...)))))..-------.........................((((...)))).))))).. ( -19.60)
>consensus
AUAACAAGAGGCUUGUC__UCCCCAUCCUCCGCCUCCAGGGACCCCAUCCUCUGUG_CUCCAUCCCUCCAUA__CCACCAUCCUCCUUCCCAGCACUGUGGAUG
.......(((((...................))))).(((((....................)))))...........(((((................))))) (-13.62 = -13.18 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:05 2006