Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,379,431 – 11,379,524 |
Length | 93 |
Max. P | 0.899196 |
Location | 11,379,431 – 11,379,524 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -26.68 |
Consensus MFE | -13.16 |
Energy contribution | -12.84 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.41 |
Mean z-score | -2.05 |
Structure conservation index | 0.49 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11379431 93 - 22224390 UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUUUUAUUUUUUCUGUUAUUAUUGUCGCUUCUUCGAUAU-GCGGAU----AUGCA----GCAGGAGAUGAGGA------------ ..(((((.(((....))))))))......((((((((((((((((((((..(((((......))))).-...)))----).)))----).))))))))))))------------ ( -21.30) >DroSec_CAF1 39425 92 - 1 UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUUUUGUU-UUCCUGUUAUUAUUGUCGCUUCUUCGAUAU-GCGGAU----AUGCA----GCAGGAGAUGAGGA------------ ..(((((.(((....)))))))).....((((....(-((((((((.....(((((......))))).-(((...----.))))----)))))))).)))).------------ ( -23.60) >DroEre_CAF1 45661 92 - 1 UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUUUUGAU-UUCCUGUUGUUGUUGUCGCUUCUUCGAUAU-GCGGAU----AUGCA----GCAGGAGAUGAGGA------------ ..(((((.(((....)))))))).......((((.((-((((((((((.....((((...........-))))..----..)))----))))))))).))))------------ ( -29.40) >DroYak_CAF1 44531 92 - 1 UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUGUUGUU-UUCCUGUUAUUAUUGUCGCUUCUUCGAUAU-GCGGAU----AUGCA----GCAGGAGAUGAGGA------------ ..(((((.(((....)))))))).....((..((...-.(((((((.....(((((......))))).-(((...----.))))----))))))))..))..------------ ( -22.50) >DroAna_CAF1 28693 113 - 1 UUUAUUUUCCUUUCGGCUAGGCCCCUCACGCCUCGAG-UCCCGCUUGUUAUUGCUGCCGUUCCGAUAAGGCGGAUGUUGAUGCGGCUCGCAGGAGAUGAGCCACCGACGGUCGA ............((((((.((...(((((.(((((((-..((((..((((...(((((..........)))))....)))))))))))).))).).))))...))...)))))) ( -36.60) >consensus UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUUUUGUU_UUCCUGUUAUUAUUGUCGCUUCUUCGAUAU_GCGGAU____AUGCA____GCAGGAGAUGAGGA____________ ..((((((((....)).))))))......((((((((..((((((......(((......((((......)))).......)))....))))))))))))))............ (-13.16 = -12.84 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:04 2006