Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,378,507 – 11,378,614 |
Length | 107 |
Max. P | 0.915518 |
Location | 11,378,507 – 11,378,614 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 90.20 |
Mean single sequence MFE | -18.05 |
Consensus MFE | -14.73 |
Energy contribution | -15.72 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.04 |
Mean z-score | -2.16 |
Structure conservation index | 0.82 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11378507 107 - 22224390 AAAAAAAAGAUUGCAGUUGAUUGACAGAAUUGGGACGACAACAAAACUCUUACAUCGUGUGGCACAUAGCAACGUUCGCAAAGGCGAACACAAA----AAAAAAAAUUAAA ..........((((.((((.(((.(........).)))))))..............(((...)))...)))).((((((....)))))).....----............. ( -16.90) >DroSec_CAF1 38525 109 - 1 AA--AAAAGAUUGCAGUUGAUUGACAGAAUUGGGACGACAACAAAACUCUUACAUCGUGUGGCACAUAGCAACGAUAUGUAAGGCGAACAGAAAACAAAAAAAAAAUUAAA ..--....(.((((.((((.(((.(........).)))))))......((((((((((...((.....)).))))..)))))))))).)...................... ( -18.50) >DroEre_CAF1 44782 106 - 1 AAAAAAAAGAUUGCAGUUGAUUGACAGAAUUGGGACGACAACAAAACUCUUACAUCGUGCGGCACAUAGCAACAAUAUGUAAGGCGAACAAAAA----ACA-AAAAUAAAA ........(.((((.((((.(((.(........).)))))))......(((((((..((..((.....))..))..))))))))))).).....----...-......... ( -18.20) >DroYak_CAF1 43642 105 - 1 -AAAAAAAGAUUGCAGUUGAUUGACAGAAUUGGGACGACAACAAAACUCUUACAUCGUGUGGCACAUAGCAACAAUAUGUAAGGCGAACAACAA----AAA-AAAAAUAAA -.......(.((((.((((.(((.(........).)))))))......(((((((..(((.((.....)).)))..))))))))))).).....----...-......... ( -18.60) >consensus AAAAAAAAGAUUGCAGUUGAUUGACAGAAUUGGGACGACAACAAAACUCUUACAUCGUGUGGCACAUAGCAACAAUAUGUAAGGCGAACAAAAA____AAA_AAAAUUAAA ........(.((((.((((.(((.(........).)))))))......(((((((..(((.((.....)).)))..))))))))))).)...................... (-14.73 = -15.72 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:03 2006