Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,373,562 – 11,373,669 |
Length | 107 |
Max. P | 0.580645 |
Location | 11,373,562 – 11,373,669 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 87.11 |
Mean single sequence MFE | -23.97 |
Consensus MFE | -17.03 |
Energy contribution | -17.54 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 0.71 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11373562 107 + 22224390 G-GGAAACAACAAAAUGUGUAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAUCGCCUCAUGUCGCUCCCUUGCGACAUGGGCGUAGUCUAGGGGGCCAACCCCUGAGC .-(....)........((((((........................))))))((((.((((((((......))))))))))))..(..((((((.....))))))..) ( -35.26) >DroSec_CAF1 34244 94 + 1 G-GGAAACAACAAAAUGUGUAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAUCGCCUCAUGUCGCUCCCUUGCGACAUGGGCGUAGUCUAUGGGG------------- .-(....).........(((((.....)))))......(((((.....((..((((.((((((((......))))))))))))..)).)))))..------------- ( -25.10) >DroEre_CAF1 38078 94 + 1 G-GGAAACAACAAAAUG--UAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAUCGCCUGAUGUCGCUCCC-UGCCACAUGGGCGUAGUCUAGAGGG----------AGU .-(....).......((--(((.....)))))................(((((....))))).((((((-((((.....)))(....)...))))----------))) ( -18.60) >DroYak_CAF1 39527 96 + 1 AAGAAAACAACAAAAUG--UAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAACGCCUGAUGUCGCUCCCUUGCCACAUGGGCGUAGUCUAGAGGG----------AGU .(((...........((--(((.....)))))...................((((((.((((.((......)).))))))))))..)))......----------... ( -16.90) >consensus G_GGAAACAACAAAAUG__UAUAUAUAGUAUAAAAGAAUCAUAAAAAUGCAUCGCCUCAUGUCGCUCCCUUGCCACAUGGGCGUAGUCUAGAGGG__________AGU ..(....)...................((((...............))))..(((((.(((((((......))))))))))))......................... (-17.03 = -17.54 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:01 2006