Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,373,111 – 11,373,220 |
Length | 109 |
Max. P | 0.646129 |
Location | 11,373,111 – 11,373,220 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.89 |
Mean single sequence MFE | -23.49 |
Consensus MFE | -13.52 |
Energy contribution | -13.53 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.22 |
Mean z-score | -2.05 |
Structure conservation index | 0.58 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11373111 109 - 22224390 CUAGUGAAUCACGCCAUGCGCAAGCAAAUUUCA--------ACACUA---UUUCACUUGGUGUGUUACUCAUCUGAUAUCAGGAGGAUUUAAGUCAUUAUUCAUAUCUUAAAUAUAUUUU .((((((..((((((((((....))).......--------......---.......)))))))...(((..(((....))))))........))))))..................... ( -20.85) >DroSec_CAF1 33794 110 - 1 CUAGUGAAUCACGCCAUGCGCAAGCAAAUUUCAACACUUCAACACUA---UUUCACUU-----GUUACUCAUCUGAUAUCAGGAGGAUUUAAGCCAUUAUUCAUAUUUAAA--AUAUUUU ...((((((...((..(((....)))..........((((((((...---.......)-----)))......(((....)))))))......))....)))))).......--....... ( -15.80) >DroEre_CAF1 37643 112 - 1 CCUAUGAAUCACGCCAUGCGCAAGCAAAUUUCCCUACA---UCACUA---UUUCACUUGGCCUGUUACUCAUGUGGUGUUAGGGGGAUUUUGGCCAUUAUUCAUACUUAAA--AUAUUUA ..(((((((...(((((((....)))(((..(((((((---((((..---....((.......)).......)))))).)))))..))).))))....)))))))......--....... ( -33.92) >DroYak_CAF1 39050 115 - 1 CUUGUGAAUCACGCCAUGCGCAAGCAAAUUUCCCUACA---UCACUAUUAUUUCAUUUGCAGGGUUACUCAUCUGGCAUCAGGAGGAUUUUGGCCAUUAUUCAUAUUUAAA--AUAUUUA ..(((((((...(((((((....))).....((((.((---................)).))))...(((..(((....)))))).....))))....)))))))......--....... ( -23.39) >consensus CUAGUGAAUCACGCCAUGCGCAAGCAAAUUUCACUACA___ACACUA___UUUCACUUGG_GUGUUACUCAUCUGAUAUCAGGAGGAUUUAAGCCAUUAUUCAUAUUUAAA__AUAUUUA ...((((((...(((.(((....))).........................................(((..(((....))))))......)))....))))))................ (-13.52 = -13.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:00 2006