Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,371,933 – 11,372,039 |
Length | 106 |
Max. P | 0.967291 |
Location | 11,371,933 – 11,372,039 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 68.17 |
Mean single sequence MFE | -15.04 |
Consensus MFE | -10.65 |
Energy contribution | -11.53 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -1.51 |
Structure conservation index | 0.71 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11371933 106 - 22224390 --AUAAUGA----AAAAAAAAAACUCAAGGCCGCUGCUUUAAAUGUUGGCGAAUUAUUGCACAGCAUUAGCAGAUGAAAC---AAAAAAAAAGUUGUGCGAAAAA-AAAAAACAAC --.......----..................(((((((...(((((((((((....)))).)))))))))))).))....---.........(((((........-.....))))) ( -18.82) >DroSim_CAF1 13886 116 - 1 NNNNNNNNNNNNNNNNNAAAAACCUCAAGGCCGUUGCUUUAAAUGUUGGCGAAUUAUUGCACAGCAUUAGCAGAAGAAAAGAAAAAAAAAAAGCUGUGCGAAAAAUAAAAAACAAG .............................((((..((.......))))))......(((((((((...........................)))))))))............... ( -17.13) >DroEre_CAF1 36519 90 - 1 --AUAAAAAU-GUAAAAAAAAACCUCAAGGCCGCUGCUUUAAAUGUUGGCGAAUUAUUUCACAGCUUUAGCAGAGA---------AAA-----AC--GCGCUG----AAAA---AC --........-.................((((((((((......((((..(((....))).))))...)))))...---------...-----.)--).))).----....---.. ( -13.21) >DroYak_CAF1 37958 96 - 1 --AAAAAAAUCACAUUAAAAAACCUCAAGGCCGCUGCUUUAAAUGUUGGCGAAUUAUUGCACUCCAGUAGUAGAAA---------AAAAAAAGAC--GCGAUG----AAAA---AC --.......(((..........((....)).(((((((.........))))..(((((((......)))))))...---------..........--))).))----)...---.. ( -11.00) >consensus __AUAAAAA____AAAAAAAAACCUCAAGGCCGCUGCUUUAAAUGUUGGCGAAUUAUUGCACAGCAUUAGCAGAAA_________AAAAAAAGAC__GCGAAA____AAAA___AC .................................(((((...(((((((((((....)))).))))))))))))........................................... (-10.65 = -11.53 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:59 2006