Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,371,693 – 11,371,791 |
Length | 98 |
Max. P | 0.842548 |
Location | 11,371,693 – 11,371,791 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 99.59 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -30.90 |
Energy contribution | -30.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 1.00 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11371693 98 - 22224390 UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC ........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90) >DroSec_CAF1 32394 98 - 1 UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC ........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90) >DroSim_CAF1 13645 98 - 1 UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC ........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90) >DroEre_CAF1 36267 98 - 1 UAUUGGACUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC ........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90) >DroYak_CAF1 37702 98 - 1 UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC ........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... ( -30.90) >consensus UAUUGGCCUGGAAGAAGUGGCAAAAAUGCGGACGCGGCUGCGAAAGUCGCGUCGGAGUCGCCUCGAAACCGCAAAGAAGACAAUUGCACACUCCACAC ........((((....(((((((...(((((((((((((.....))))))))).(((....))).....))))..(....)..)))).)))))))... (-30.90 = -30.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:58 2006