Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,368,113 – 11,368,213 |
Length | 100 |
Max. P | 0.985435 |
Location | 11,368,113 – 11,368,213 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 79.64 |
Mean single sequence MFE | -17.73 |
Consensus MFE | -16.91 |
Energy contribution | -16.47 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.19 |
Structure conservation index | 0.95 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11368113 100 + 22224390 UAUUAUUUAAUCUCUGUUGGUUGCUUGUAAGUUUCUCUAGCCAUAUUGUAUCUCAAGUCCUGCAGAUACUAGAUCUCUAAAGUUAGGGAAAAAUGUUAAG .......(((((......)))))((((....((((((((((......((((((((.....)).))))))(((....)))..)))))))))).....)))) ( -20.20) >DroSec_CAF1 28848 75 + 1 UAUUA-------------------------GUUUCUCUAGCCAUAUUGUAUCUCAAGUCCUGCGGAUACUAGAUCUCUAAAGUUAGGGGAAAAUGUUAAG .....-------------------------.((((((((((......((((((((.....)).))))))(((....)))..))))))))))......... ( -16.00) >DroSim_CAF1 10094 75 + 1 UAUUA-------------------------GUUUCUCUAGCCAGAUUGUAUCUCAAGUCCUGCGGAUACUAGAUCUCUAAAGUUAGGGGAAAAUGUUAAG .....-------------------------.((((((((((.(((((((((((((.....)).))))))..))))).....))))))))))......... ( -17.00) >consensus UAUUA_________________________GUUUCUCUAGCCAUAUUGUAUCUCAAGUCCUGCGGAUACUAGAUCUCUAAAGUUAGGGGAAAAUGUUAAG ...............................((((((((((......((((((((.....)).))))))(((....)))..))))))))))......... (-16.91 = -16.47 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:52 2006