Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,367,637 – 11,367,740 |
Length | 103 |
Max. P | 0.805930 |
Location | 11,367,637 – 11,367,740 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 84.71 |
Mean single sequence MFE | -22.07 |
Consensus MFE | -18.09 |
Energy contribution | -17.98 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.82 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11367637 103 - 22224390 CUAUUUUGCAUAGCAGUUG------------CAAUUAUAAUGAAUAAUUAAUACAAAUAGAUAAGGUGCACAGUGUAUAGAGAUAGACAACUAUACUCUAUAUAUUUUAAUCAAU ((((((.(((.......))------------)((((((.....)))))).....))))))....(((....(((((((((((((((....)))).)))))))))))...)))... ( -20.90) >DroSec_CAF1 28405 110 - 1 UCAUUUUGCAUAGCAGUUGAGGAGCUUUUAGAAAUUAUAAUGAAUA----AUACAAAUAGAUAAGCUGCACAGUGUAUGGAGAUAGACAACUAUACUCUAUACAUUU-CAUUGAU (((..((((...)))).)))(.((((((((...(((((.....)))----)).....))))..)))).)..(((((((((((((((....)))).))))))))))).-....... ( -22.90) >DroSim_CAF1 9638 110 - 1 UCAUUUUGCAUAGCAGUUGAGGAGCUUUUAGAAAUUAUAAUGAAUA----AUACAAAUAGAUAAGCUGCACAGUGUAUGGAGAUAGACAACUAUACUCUAUAUAUUU-AAUUGAU .............((((((((.((((((((...(((((.....)))----)).....))))..)))).)...((((((((((((((....)))).))))))))))))-))))).. ( -22.40) >consensus UCAUUUUGCAUAGCAGUUGAGGAGCUUUUAGAAAUUAUAAUGAAUA____AUACAAAUAGAUAAGCUGCACAGUGUAUGGAGAUAGACAACUAUACUCUAUAUAUUU_AAUUGAU ............((((((.............................................))))))..(((((((((((((((....)))).)))))))))))......... (-18.09 = -17.98 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:51 2006