Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,261,345 – 1,261,455 |
Length | 110 |
Max. P | 0.552056 |
Location | 1,261,345 – 1,261,455 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 93.49 |
Mean single sequence MFE | -36.45 |
Consensus MFE | -31.12 |
Energy contribution | -31.75 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.06 |
Mean z-score | -1.50 |
Structure conservation index | 0.85 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1261345 110 - 22224390 GACGAUAACCGCAGAAGUCGCGCCGCAUCCGCCAUUGUGUCGCAAUUGCAUUCACAAUCGCUGU----GUUGCAGUUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG ..((.((((.((((..((.(((....(((((((((((((.....((((((..((((.....)))----).)))))))))))))))).)))))).))..)))).))))))..... ( -36.80) >DroSec_CAF1 15525 110 - 1 GACGAUAACCGCAGAAGUCGCGCCGCAUCCGCCAUUGUGUCGCAAUCGGAUUCGCAAUCGCUGU----GUUGCAGCUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG ..((.((((.((((.((((((((((((((((..((((.....)))))))))..))....((((.----....))))......))))))))).......)))).))))))..... ( -38.00) >DroEre_CAF1 17174 114 - 1 GACGAUAACCGCAGAAGUCGCGCCGCAUCCGCCAUUGUGUCGCAAUCGGAUUCGCAAUCGCUGUUGCAGUUGCAGCUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG ..((.((((.((((.((((((((((.(((((..((((.....))))))))).)(((((.((....)).))))).........))))))))).......)))).))))))..... ( -39.60) >DroYak_CAF1 19024 108 - 1 GACGAUAACCGCAAAAGUCACGCCGCAUCCGCCAUUGUGUCGCAAUCGGAUUCGCAAUCGCUGUUG------CAGCUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG ..((.((((.(((...((.(((....((((((((((((((.(((((.((((.....))).).))))------).)).))))))))).)))))).))...))).))))))..... ( -31.40) >consensus GACGAUAACCGCAGAAGUCGCGCCGCAUCCGCCAUUGUGUCGCAAUCGGAUUCGCAAUCGCUGU____GUUGCAGCUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG ..((.((((.((((.((((((((((.(((((..((((.....))))))))).)......(((((.......)))))......))))))))).......)))).))))))..... (-31.12 = -31.75 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:26 2006