Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,364,426 – 11,364,545 |
Length | 119 |
Max. P | 0.577090 |
Location | 11,364,426 – 11,364,545 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 95.93 |
Mean single sequence MFE | -30.33 |
Consensus MFE | -27.65 |
Energy contribution | -28.03 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.54 |
Structure conservation index | 0.91 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11364426 119 + 22224390 CCCAAUUAUGAAAUGGAAAAGCGCCGCCGAGCUGAGGAAAACCCAGCAGCAUACUAAAUGGGGACAACGAGGCGUAUGAUUUAUGUGUUAGCGAGCGAAUGAAUCAAUGGUUAAACGAA .(((................(((((..((.((((.((....))))))...........((....)).)).))))).((((((((.((((....)))).)))))))).)))......... ( -31.80) >DroSec_CAF1 25248 118 + 1 CCCAAUUAUGAAAUGGAAAAGCGCCGGCGAGCUGAGGAAAACCCAGCAGCAUACUAAAUGG-GACAACGAGGCGUAUGAUUUAUGUGCUAGCGAGCGAAUGAAUCAAUGGUUAAACGAA .(((................(((((..((.((((.((....))))))..(((.....))).-.....)).))))).((((((((.((((....)))).)))))))).)))......... ( -31.50) >DroEre_CAF1 28922 118 + 1 CCCAAUUAUGAAAUGGAAAAGCGCCGGCGAUCUGAGGAAAACCCAGCAGCAUAU-AAAUGGGGACAACGAGGCGUAUGAUUUAUGUGUUAGCGAGCAAAUGAAUCAAUGGUUAAACGAA .(((................(((((.((...(((.((....)))))..))....-...((....))....))))).((((((((.((((....)))).)))))))).)))......... ( -29.60) >DroYak_CAF1 30431 118 + 1 CCCAAUUAUGAAAUGGAAAAGCGCCGGCGAUCCGAGGAAAACCCAGCAGCAUGC-AAAUGGGGACAACGAGGCGUAUGAUUUAUGUGUUAGCGAGCGAAUGAAUCAAUGGUUAAACGAA .(((................(((((..((.((....))...((((((.....))-...)))).....)).))))).((((((((.((((....)))).)))))))).)))......... ( -28.40) >consensus CCCAAUUAUGAAAUGGAAAAGCGCCGGCGAGCUGAGGAAAACCCAGCAGCAUAC_AAAUGGGGACAACGAGGCGUAUGAUUUAUGUGUUAGCGAGCGAAUGAAUCAAUGGUUAAACGAA .(((................(((((..((.((((.((....))))))...........((....)).)).))))).((((((((.((((....)))).)))))))).)))......... (-27.65 = -28.03 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:50 2006