Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,363,231 – 11,363,348 |
Length | 117 |
Max. P | 0.945986 |
Location | 11,363,231 – 11,363,348 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 92.43 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -30.08 |
Energy contribution | -29.95 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.88 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.945986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11363231 117 - 22224390 ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGGAUUCGGAUUUGGUUUUGGAUUCGGAUCGUAUCGAAUGGCGUUGCCUUUGAUCGCAUUGUUUUUUUUUUCUU ...(((((..(((......))))))))...((((....(((((((((((((((......)))))))))))))))..(((((.(((...))))))))))))................. ( -32.90) >DroSec_CAF1 24112 112 - 1 ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGGAUUCGGAUUUGGUUUUGGAUUCGGAUCGUAUCGAAUGGCGUUGCCUUUGAUCGC-----UUUUUUUUUCUA ..................((((..((((((((((....(((((((((((((((......)))))))))))))))..(((((.(((...))))))))))))-----))))))..)))) ( -36.20) >DroEre_CAF1 27811 115 - 1 ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGGAUUCGGAUUUGGACUUGGAUUCGGAUCGUAUCGAAUCGCGUUGCCUUUGAUCGCGUUUUU--UUCUUUUUU .......((.(((......))).((((((((((.((.(((((...(((((((((((......)))))))))))..))))).)).)))).))))))...))......--......... ( -33.30) >DroYak_CAF1 29274 115 - 1 ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGAAUUUGGAUUUGGAUUUGGAUUCGGAUCGUAUCGAAUCGCGUUGCCUUUGAUCGCGUUUUU--UUUUUUCUU .((...((((.(.(((((((...)))))))((((....(((((((((((..(((....)))..))))))))))).......))))).))))..))...........--......... ( -34.00) >consensus ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGGAUUCGGAUUUGGAUUUGGAUUCGGAUCGUAUCGAAUCGCGUUGCCUUUGAUCGCGUUUUU__UUUUUUCUU .((...((((.(((((((......)))))))(((....(((((((((((((((......)))))))))))))))..)))........))))..))...................... (-30.08 = -29.95 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:49 2006