Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,352,447 – 11,352,538 |
Length | 91 |
Max. P | 0.916975 |
Location | 11,352,447 – 11,352,538 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 92.46 |
Mean single sequence MFE | -19.20 |
Consensus MFE | -16.08 |
Energy contribution | -16.82 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.84 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11352447 91 - 22224390 UGCCAGCGAAAAAUGCGAAAUUAUUAAGCAUUUUUC--------AAGUUAUCCAAUCACAAAGAGACCUUCAAGCUGGUUAACUAAGGAUAAUAAAUGU .......(((((((((...........)))))))))--------..(((((((..((.....))((((........))))......)))))))...... ( -21.00) >DroSec_CAF1 13420 91 - 1 UGCCAGCGAAAAAUGCGAAAUUAUUAAGCAUUUUUC--------AAGUUAUCCAAUCACAAAGAGACCUUCAAGCUGGUUAGCUAAGGAUAAUAAAUGU .......(((((((((...........)))))))))--------..(((((((..((.....))((((........))))......)))))))...... ( -21.00) >DroEre_CAF1 17026 91 - 1 UGCCAGCGAAAAAUGCGAAAAUAUUAAGCAUUUUUC--------AAGUUAUCCAAUCACAAAGAGACCUUCAAGCUGGUUAGCUAAGGAUAAUAAAUGU .......(((((((((...........)))))))))--------..(((((((..((.....))((((........))))......)))))))...... ( -21.00) >DroYak_CAF1 17506 99 - 1 UGCCAACGAAAAAUGCGAAAAUAUUAACAAUUUUUCAAGUUUUCAAGUUAUCCAAUCACAAAAAGACCUUCAAGCUGGUUAGCUAAGGAUAAUAAAUGU .......(((((....(((((..........)))))...)))))..(((((((...........(.....).((((....))))..)))))))...... ( -13.80) >consensus UGCCAGCGAAAAAUGCGAAAAUAUUAAGCAUUUUUC________AAGUUAUCCAAUCACAAAGAGACCUUCAAGCUGGUUAGCUAAGGAUAAUAAAUGU .......(((((((((...........)))))))))..........(((((((..((.....))((((........))))......)))))))...... (-16.08 = -16.82 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:39 2006