Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,349,568 – 11,349,683 |
Length | 115 |
Max. P | 0.658296 |
Location | 11,349,568 – 11,349,683 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 82.32 |
Mean single sequence MFE | -25.27 |
Consensus MFE | -17.94 |
Energy contribution | -19.83 |
Covariance contribution | 1.90 |
Combinations/Pair | 1.12 |
Mean z-score | -1.80 |
Structure conservation index | 0.71 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11349568 115 + 22224390 CUUUAAUAGGGUACUUCAGACAUGGACAAAGCUUGGCACUGCCCUUUCUUGUUGGAAACGAAGCAUUUCUAUGCUUACCAAUCAAUAAAAAUGUUAGAAAUAUUUAAAUUCAUUU .((((((((((((.((((....))))....((...))..)))))....(((((((.....((((((....)))))).....)))))))...)))))))................. ( -20.20) >DroSec_CAF1 10539 114 + 1 CUUUAAUAGGGUAUUUCAGACAUGGACAAAGCUUGGCCAUGCCCUUUGUUGUUGGAAACGAAGCAUUUCUAUGCUUACCAAUCAAUAA-AUUGUCCGAAAUAUUUAAAUUCAUUU ........(((((((((.((((..(((((((...(((...))))))))))(((((.....((((((....)))))).)))))......-..)))).))))))))).......... ( -28.10) >DroYak_CAF1 14635 107 + 1 CUUUAAUAAGGUAUUUCAGACAUGGGCAAGGGUUGGCAAUGUCCCUUGUUGUUGGAAACGACACAUUUCUUUGCUUACCAAUUAUUAAAACUGUUAGAAACA----AAUGU---- .((((((((((((....(((.(((((((((((..........))))))))((((....)))).))).))).....))))..)))))))).............----.....---- ( -27.50) >consensus CUUUAAUAGGGUAUUUCAGACAUGGACAAAGCUUGGCAAUGCCCUUUGUUGUUGGAAACGAAGCAUUUCUAUGCUUACCAAUCAAUAAAAAUGUUAGAAAUAUUUAAAUUCAUUU ........(((((((((.((((..(((((((...(((...))))))))))(((((.....((((((....)))))).))))).........)))).))))))))).......... (-17.94 = -19.83 + 1.90)
Location | 11,349,568 – 11,349,683 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 82.32 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -16.09 |
Energy contribution | -16.43 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.12 |
Mean z-score | -1.99 |
Structure conservation index | 0.64 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11349568 115 - 22224390 AAAUGAAUUUAAAUAUUUCUAACAUUUUUAUUGAUUGGUAAGCAUAGAAAUGCUUCGUUUCCAACAAGAAAGGGCAGUGCCAAGCUUUGUCCAUGUCUGAAGUACCCUAUUAAAG .............((((((..((((.....(((.((((.((((((....)))))).....)))))))....((((((.((...)).))))))))))..))))))........... ( -24.20) >DroSec_CAF1 10539 114 - 1 AAAUGAAUUUAAAUAUUUCGGACAAU-UUAUUGAUUGGUAAGCAUAGAAAUGCUUCGUUUCCAACAACAAAGGGCAUGGCCAAGCUUUGUCCAUGUCUGAAAUACCCUAUUAAAG .............(((((((((((.(-((.(((.((((.((((((....)))))).....))))))).)))(((((.(((...))).))))).)))))))))))........... ( -31.40) >DroYak_CAF1 14635 107 - 1 ----ACAUU----UGUUUCUAACAGUUUUAAUAAUUGGUAAGCAAAGAAAUGUGUCGUUUCCAACAACAAGGGACAUUGCCAACCCUUGCCCAUGUCUGAAAUACCUUAUUAAAG ----(((((----(.(((((..(((((.....)))))...)).))).))))))...(((((..(((.((((((..........))))))....)))..)))))............ ( -19.70) >consensus AAAUGAAUUUAAAUAUUUCUAACAAUUUUAUUGAUUGGUAAGCAUAGAAAUGCUUCGUUUCCAACAACAAAGGGCAUUGCCAAGCUUUGUCCAUGUCUGAAAUACCCUAUUAAAG .............((((((..(((..........((((.((((((....)))))).....)))).......(((((..(.....)..))))).)))..))))))........... (-16.09 = -16.43 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:37 2006