Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,341,455 – 11,341,555 |
Length | 100 |
Max. P | 0.554136 |
Location | 11,341,455 – 11,341,555 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 88.67 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -19.10 |
Energy contribution | -19.60 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.10 |
Mean z-score | -1.35 |
Structure conservation index | 0.88 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11341455 100 - 22224390 AAAGGAGCACUAUUGCCAAGGAAAAAUUAAACCCGUCUGCAGAAGAACAUUUAGUUCUGCUAAAUAAGGCAAUUUUGGCAAACGGAAUUCCAAGGGAGAA- ...((((..((.(((((((((...........))((((..((.(((((.....))))).)).....))))....)))))))..))..)))).........- ( -22.00) >DroSec_CAF1 2438 100 - 1 AAA-GAGCACUAUUGCCAAGGAAAAAUAAAACCCGUCUGAAACAGAACAUUUACUUCUGCUAAAUAAGGCAAUUUCGGCAAACGGAAUUCCAAGGGAGUUG ...-(.(((....))))..............(((........(((((.......)))))........((.(((((((.....)))))))))..)))..... ( -18.40) >DroEre_CAF1 6231 97 - 1 AAA-GCUCACUAUUACCAUGGAAAAAU--AACCCGUCUGCGGCAGAACAUUUGCUUCUGCUAAAUAAGGCAAUUUUGGCA-UCGGAAUUCCAAGGGAGUUG ..(-((((.......((.(((((....--.....((((..((((((((....).))))))).....))))..(((((...-.)))))))))).))))))). ( -22.21) >DroYak_CAF1 6515 97 - 1 AAA-GAGCACUAUUACCAAGGAAAAAU--AACCCGUCUGCGGCAGAACAUUUAGUUCUGCUAAAUAAGGCAAUUUCGGCA-UCGGAAUUCCAAGGGAGUUA ...-.......................--..(((......((((((((.....))))))))......((.(((((((...-.)))))))))..)))..... ( -24.60) >consensus AAA_GAGCACUAUUACCAAGGAAAAAU__AACCCGUCUGCAGCAGAACAUUUACUUCUGCUAAAUAAGGCAAUUUCGGCA_ACGGAAUUCCAAGGGAGUUG ...............................(((......((((((((.....))))))))......((.(((((((.....)))))))))..)))..... (-19.10 = -19.60 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:34 2006