Locus 4297

Sequence ID	X_DroMel_CAF1
Location	11,320,830 – 11,320,935
Length	105
Max. P	0.618294

overview

Window 5

Location	11,320,830 – 11,320,935
Length	105
Sequences	6
Columns	106
Reading direction	forward
Mean pairwise identity	78.54
Mean single sequence MFE	-33.38
Consensus MFE	-19.46
Energy contribution	-19.35
Covariance contribution	-0.11
Combinations/Pair	1.43
Mean z-score	-1.64
Structure conservation index	0.58
SVM decision value	0.17
SVM RNA-class probability	0.618294
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11320830 105 + 22224390
ACAUUGUAUAUUCUUAUUGGCCUGGCCCUGACAUCGACCAUCAUUGAGCUGGUGCGAAGGCAAUAUGCCACCAGUUGGGCCAAGCUGCAGGUGGG-UUCUACAAGU
...(((((....(((((((((.((((((.(((.(((((((.(.....).)))).))).(((.....)))....))))))))).)))...))))))-...))))).. ( -35.10)
>DroVir_CAF1 33063 105 + 1
ACGCUCUAUAUACUCAUUGGCCUGGCUCUAACCUCCACUAUCAUUGAGCUGGUGCGUCGCCAGUACGCGACCAGCUGGGCCAAGCUGCAGGUAAG-UGCUUACCUG
................(((((((((......)).............((((((((((((....).)))).))))))))))))))....(((((((.-...))))))) ( -36.70)
>DroGri_CAF1 31527 105 + 1
ACUCUGUAUAUACUCAUUGGCCUGGCGCUAACGUCGACCAUUAUUGAGCUGGUACGUCGCCAGUACGCGACCAGCUGGGCCAAACUGCAGGUAUG-UGCUAACCCA
.....(((((((((((((((((((((((....).)).)).......(((((((.((.((......))))))))))))))))))..))..))))))-)))....... ( -38.60)
>DroEre_CAF1 20867 106 + 1
ACAUUGUAUAUUCUCAUUGGCUUGGCCUUGACAUCGACCAUUAUUGAGCUGGUGAGGCGGCAGUAUGCCACCAGCUGGGCCAAGCUGCAGGUAAGGUUCUACAAAU
...(((((...(((.(((((((((((((.....((((......))))((((((..((((......)))))))))).))))))))))...))).)))...))))).. ( -37.10)
>DroWil_CAF1 35462 105 + 1
ACCUUAUACAUUUUGAUUGGUCUGGCCCUGACAUCGACCAUUAUAGAAUUGGUGCGUCGCCAAUAUGCCACAAGUUGGGCAAAAUUGCAGGUAAG-UGCAAAUAAU
((((....((.((((..((((.((((...(....)((((((((......))))).)))))))....)))))))).)).(((....)))))))...-.......... ( -21.00)
>DroYak_CAF1 24191 102 + 1
ACAUUGUACAUCCUCAUUGGCCUGGCCCUGACAUCGACCAUCAUUGAGCUGGUGCGACGGCAAUAUGCCACCAGUUGGGCCAAACUGCAGGUAAGU----UCAAAU
...(((.((..(((((((((((..((.......(((((((.(.....).)))).))).(((.....)))....))..))))))..)).)))...))----.))).. ( -31.80)
>consensus
ACAUUGUAUAUUCUCAUUGGCCUGGCCCUGACAUCGACCAUCAUUGAGCUGGUGCGUCGCCAAUAUGCCACCAGCUGGGCCAAACUGCAGGUAAG_UGCUAAAAAU
..................(((.((((((..........((....))((((((((((.........))).))))))))))))).))).................... (-19.46 = -19.35 +  -0.11)

alignment

secondary structure

dotplot

Window 6

Location	11,320,830 – 11,320,935
Length	105
Sequences	6
Columns	106
Reading direction	reverse
Mean pairwise identity	78.54
Mean single sequence MFE	-32.83
Consensus MFE	-19.53
Energy contribution	-20.57
Covariance contribution	1.03
Combinations/Pair	1.35
Mean z-score	-1.47
Structure conservation index	0.59
SVM decision value	-0.04
SVM RNA-class probability	0.515586
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11320830 105 - 22224390
ACUUGUAGAA-CCCACCUGCAGCUUGGCCCAACUGGUGGCAUAUUGCCUUCGCACCAGCUCAAUGAUGGUCGAUGUCAGGGCCAGGCCAAUAAGAAUAUACAAUGU
...(((((..-.....)))))(((((((((.......(((.....))).(((.((((.(.....).))))))).....)))))))))................... ( -34.30)
>DroVir_CAF1 33063 105 - 1
CAGGUAAGCA-CUUACCUGCAGCUUGGCCCAGCUGGUCGCGUACUGGCGACGCACCAGCUCAAUGAUAGUGGAGGUUAGAGCCAGGCCAAUGAGUAUAUAGAGCGU
(((((((...-.)))))))..((((((((.(((((((.((((.......))))))))))).............(((....))).)))))............))).. ( -36.50)
>DroGri_CAF1 31527 105 - 1
UGGGUUAGCA-CAUACCUGCAGUUUGGCCCAGCUGGUCGCGUACUGGCGACGUACCAGCUCAAUAAUGGUCGACGUUAGCGCCAGGCCAAUGAGUAUAUACAGAGU
.((((.....-...))))((...((((((.((((((((((((....))).)).)))))))......(((.((.(....))))))))))))...))........... ( -33.30)
>DroEre_CAF1 20867 106 - 1
AUUUGUAGAACCUUACCUGCAGCUUGGCCCAGCUGGUGGCAUACUGCCGCCUCACCAGCUCAAUAAUGGUCGAUGUCAAGGCCAAGCCAAUGAGAAUAUACAAUGU
..(((((....((((..((..((((((((.....((((((.....))))))((((((.........)))).))......)))))))))).))))....)))))... ( -34.80)
>DroWil_CAF1 35462 105 - 1
AUUAUUUGCA-CUUACCUGCAAUUUUGCCCAACUUGUGGCAUAUUGGCGACGCACCAAUUCUAUAAUGGUCGAUGUCAGGGCCAGACCAAUCAAAAUGUAUAAGGU
..........-...((((...((((((.......(.((((...((((((.((.((((.........)))))).)))))).)))).).....)))))).....)))) ( -23.80)
>DroYak_CAF1 24191 102 - 1
AUUUGA----ACUUACCUGCAGUUUGGCCCAACUGGUGGCAUAUUGCCGUCGCACCAGCUCAAUGAUGGUCGAUGUCAGGGCCAGGCCAAUGAGGAUGUACAAUGU
..(((.----((...(((.(((((((((((.......(((.....)))((((.((((.(.....).))))))))....)))))))))...)))))..)).)))... ( -34.30)
>consensus
AUUUGUAGCA_CUUACCUGCAGCUUGGCCCAACUGGUGGCAUACUGCCGACGCACCAGCUCAAUAAUGGUCGAUGUCAGGGCCAGGCCAAUGAGAAUAUACAAUGU
.....................((((((((((((((((.((...........)))))))))...(((((.....))))))))))))))................... (-19.53 = -20.57 +   1.03)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:33 2006