Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,305,469 – 11,305,568 |
Length | 99 |
Max. P | 0.513971 |
Location | 11,305,469 – 11,305,568 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 87.49 |
Mean single sequence MFE | -23.74 |
Consensus MFE | -15.82 |
Energy contribution | -17.22 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.67 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11305469 99 - 22224390 CUCCAAACAAUUUGAACGCUAGCCAUUUUUCGGCUUUUCGCCCAACAACA--CAAAUCAUUUUGCAUGUUCGCGGC-AGCCGCAAAAGGCGAGCCAAAGGUA ..........((((...(((.(((.((((.(((((....((((((((...--((((....))))..)))).).)))-))))).))))))).))))))).... ( -25.50) >DroSec_CAF1 8966 98 - 1 -UCCAAACAAUUUGAACGCUAGCCAUUUUUCGGCUUUUGGCCCAACAACA--CAAAUCAUUUUGCAUGUUCGCGGC-AGCCGCAAAAGGCGAGCCAAAGUGA -......((.((((...(((.(((.((((.(((((....((((((((...--((((....))))..)))).).)))-))))).))))))).))))))).)). ( -26.90) >DroSim_CAF1 10025 99 - 1 CUCCAAACAAUUUGAACGCUAGCCAUUUUUCGGCUUUUGGCCCAACAACA--CAAAUCAUUUUGCAUGUUCGCGGC-AGCCGCAAAAGGCGAGCCAAAGUGA .......((.((((...(((.(((.((((.(((((....((((((((...--((((....))))..)))).).)))-))))).))))))).))))))).)). ( -26.90) >DroEre_CAF1 5088 96 - 1 CCCCAAACAAUUUGAACGCCAGCCG-UUUUCGGCUUUU-GCCCAACAACA--CAAAUCAUUUUGCAUGUUCGCGGCGAGCC--AAAGAGCAAAAAAAAAAAA ................(((((((((-....)))))...-((..((((...--((((....))))..)))).)))))).((.--.....))............ ( -19.40) >DroYak_CAF1 8942 97 - 1 CCCCAAACAAUUUGAACGCCAGCAG-UUUUCGGCUUUUGGCCCAACAACACACAAAUCAUUUUGCAUGUUCGCGGC-AGCC--AAUAGGCAAAAAAAAAAA- .................(((.((.(-((...(((.....))).)))((((..((((....))))..)))).)))))-.(((--....)))...........- ( -20.00) >consensus CUCCAAACAAUUUGAACGCUAGCCAUUUUUCGGCUUUUGGCCCAACAACA__CAAAUCAUUUUGCAUGUUCGCGGC_AGCCGCAAAAGGCGAGCCAAAGAAA .....................(((.((((.(((((....(((....((((..((((....))))..))))...))).))))).)))))))............ (-15.82 = -17.22 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:24 2006