Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,295,682 – 11,295,834 |
Length | 152 |
Max. P | 0.998929 |
Location | 11,295,682 – 11,295,795 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 84.39 |
Mean single sequence MFE | -27.28 |
Consensus MFE | -21.22 |
Energy contribution | -21.97 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.19 |
Mean z-score | -1.98 |
Structure conservation index | 0.78 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11295682 113 + 22224390 UCAUUCAGCACAUGAUGCUGUAUGCUACUAGUUACACUUGAAAAAAAAAACAGCUGGGAUAACGCAGAGUAAUAUGGCAAAUCUAGAAAGUAUUU-UGUUAUUGUAGCUGUUUU--- .(((.(((((.....))))).)))......................((((((((((.((((..((((((((...(((.....))).....)))))-))))))).))))))))))--- ( -27.80) >DroSim_CAF1 20986 113 + 1 UUAUUCAGCACAUGAUGCUGUAUGCUACUAG-UACACUUGAAAA--AAAACAGCUGAGAUAACGCAGAGUAAUAUGGCAAAUCUAGAAUGUAUCU-UGUUAUUUUAGCUGUUUUUUG .(((.(((((.....))))).))).......-..........((--((((((((((((((((((.(((......(((.....))).......)))-)))))))))))))))))))). ( -30.92) >DroEre_CAF1 25500 108 + 1 UUAUUCAGCACAUGAUGCUGUAUGCUACUAG-UACACUUGAAA----AAACAGCUGAGAUAACGCAGAGCAAAAAGGCAAUUGCAUAAAGUAAUU-UGUUGCUUUAGCAGUUUU--- ...((((((...((.(((((........)))-)))).((....----))...))))))..........((......))((((((.((((((((..-..))))))))))))))..--- ( -21.70) >DroYak_CAF1 26325 109 + 1 UUAUUCAGCACAUGAUGCUGUAUGCUGCCAG-UACACUUGGAG----AAACGGUUGAGAUAACGCAGAGUAAUAUGGCAAUGCUAGAAAGUAAUUUUGGUGUUUUAGCCGUUUU--- .(((.(((((.....))))).)))...((((-.....)))).(----((((((((((((((.(.((((((.((.((((...))))....)).))))))))))))))))))))))--- ( -28.70) >consensus UUAUUCAGCACAUGAUGCUGUAUGCUACUAG_UACACUUGAAA____AAACAGCUGAGAUAACGCAGAGUAAUAUGGCAAAUCUAGAAAGUAAUU_UGUUAUUUUAGCUGUUUU___ .(((.(((((.....))))).))).......................(((((((((((((((((.(((......(((.....))).......))).))))))))))))))))).... (-21.22 = -21.97 + 0.75)
Location | 11,295,722 – 11,295,834 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.38 |
Mean single sequence MFE | -28.36 |
Consensus MFE | -18.78 |
Energy contribution | -19.97 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.20 |
Mean z-score | -3.14 |
Structure conservation index | 0.66 |
SVM decision value | 3.29 |
SVM RNA-class probability | 0.998929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11295722 112 + 22224390 AAAAAAAAAACAGCUGGGAUAACGCAGAGUAAUAUGGCAAAUCUAGAAAGUAUUU-UGUUAUUGUAGCUGUUUU----UUUUUCAUUUCAGUACUUAAUGAGAUGAUCACGAAAAGC ..((((((((((((((.((((..((((((((...(((.....))).....)))))-))))))).))))))))))----))))((((((((........))))))))........... ( -32.50) >DroSim_CAF1 21025 114 + 1 AAAA--AAAACAGCUGAGAUAACGCAGAGUAAUAUGGCAAAUCUAGAAUGUAUCU-UGUUAUUUUAGCUGUUUUUUGUUUUUUCAUUUCAGUACUUAAUGAGAUGAUCACGAAAAGC ..((--((((((((((((((((((.(((......(((.....))).......)))-))))))))))))))))))))((((((((((((((........)))))))).....)))))) ( -33.82) >DroEre_CAF1 25539 103 + 1 AAA----AAACAGCUGAGAUAACGCAGAGCAAAAAGGCAAUUGCAUAAAGUAAUU-UGUUGCUUUAGCAGUUUU---------UAUUUCAGUACUUAAUGCGAUGAUCACGAAACCC ...----.....((((((((((......((......))((((((.((((((((..-..)))))))))))))).)---------)))))))))......................... ( -22.90) >DroYak_CAF1 26364 104 + 1 GAG----AAACGGUUGAGAUAACGCAGAGUAAUAUGGCAAUGCUAGAAAGUAAUUUUGGUGUUUUAGCCGUUUU---------UAUUUCAGUACUUAACGAGAUGAUCACGAAUUCC .((----((((((((((((((.(.((((((.((.((((...))))....)).))))))))))))))))))))))---------)(((((.((.....)))))))............. ( -24.20) >consensus AAA____AAACAGCUGAGAUAACGCAGAGUAAUAUGGCAAAUCUAGAAAGUAAUU_UGUUAUUUUAGCUGUUUU_________CAUUUCAGUACUUAAUGAGAUGAUCACGAAAACC .......(((((((((((((((((.(((......(((.....))).......))).)))))))))))))))))..........(((((((........)))))))............ (-18.78 = -19.97 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:20 2006