Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,287,752 – 11,287,877 |
Length | 125 |
Max. P | 0.998511 |
Location | 11,287,752 – 11,287,860 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -30.57 |
Consensus MFE | -28.74 |
Energy contribution | -28.63 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.50 |
Structure conservation index | 0.94 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11287752 108 - 22224390 UAUGUGUGUUUGUAUAUAGUACAUAUGGUGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUUCCUGUGCGCUUGACACGACAAUUCGUACUGAAACU ((((..(((((((.....(((((...(((((((......))))(((((((((((...))))))).)))))))...))))).....))).))))...))))........ ( -32.70) >DroEre_CAF1 17496 96 - 1 ------------UAUAUACCACAUAUGGCGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUUCCUGUGCGCUUGACACGACAAUUCGUACUGAAACU ------------.......((((...(((((((......))))(((((((((((...))))))).)))))))...))))........((((....))))......... ( -28.20) >DroYak_CAF1 18325 96 - 1 ------------UAUAUAGUACAUAUGGCGGCUCAAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUUCCUGUGCGCUUGACACGACAAUUCGUACUGAAACU ------------......(((((...(((((((......))))(((((((((((...))))))).)))))))...))))).......((((....))))......... ( -30.80) >consensus ____________UAUAUAGUACAUAUGGCGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUUCCUGUGCGCUUGACACGACAAUUCGUACUGAAACU ..................(((((...(((((((......))))(((((((((((...))))))).)))))))...))))).......((((....))))......... (-28.74 = -28.63 + -0.11)
Location | 11,287,787 – 11,287,877 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 77.42 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -20.82 |
Energy contribution | -20.60 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -2.45 |
Structure conservation index | 0.84 |
SVM decision value | 3.13 |
SVM RNA-class probability | 0.998511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11287787 90 - 22224390 CGAUAUAUCUAUAUAUAUAUGUGUGUUUGUAUAUAGUACAUAUGGUGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUU (.((((..(((((((((.((....)).)))))))))...)))).).((((......))))(((((((((((...))))))).)))).... ( -26.90) >DroEre_CAF1 17531 68 - 1 CGUUGUA----------------------UAUAUACCACAUAUGGCGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUU .((.(((----------------------....))).))....(((((((......))))(((((((((((...))))))).))))))). ( -22.80) >DroYak_CAF1 18360 68 - 1 CGAUGUA----------------------UAUAUAGUACAUAUGGCGGCUCAAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUU ..(((((----------------------(.....))))))..(((((((......))))(((((((((((...))))))).))))))). ( -25.10) >consensus CGAUGUA______________________UAUAUAGUACAUAUGGCGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUU ...........................................(((((((......))))(((((((((((...))))))).))))))). (-20.82 = -20.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:16 2006