Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,282,277 – 11,282,386 |
Length | 109 |
Max. P | 0.589553 |
Location | 11,282,277 – 11,282,386 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 74.69 |
Mean single sequence MFE | -33.20 |
Consensus MFE | -21.01 |
Energy contribution | -21.15 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.29 |
Mean z-score | -1.22 |
Structure conservation index | 0.63 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11282277 109 + 22224390 UCGUUGGCGUUUUCCAGCUGAUGCGAGACCUCCAAGUAUGAUCGGCGCAGCUGCAUUAGCUCCGUCUGAAUGGCAUAGCUGUAUGAGAAAGA------GGAAAACCACCAGUUUA ...((((.((((((((((((.(((((.((......))....)).)))))))).((((((((..(((.....)))..))))).))).......------)))))))..)))).... ( -30.90) >DroVir_CAF1 14314 110 + 1 UCGUUGGCAUUCUCCAGUUGGUGUGACACCUCCAGAUAGGAGUGUCGCAGCUGCAUUAGCUCCGUUUGAAUGGCAUAGCUGAGCAAUAGAUAGA----UGCAUAUUA-AAGAUUA ......(((((........(.((((((((.(((.....))))))))))).)(((.((((((((((....))))...))))))))).......))----)))......-....... ( -33.10) >DroGri_CAF1 20258 108 + 1 UCGUUGGCAUUCUCAAGUUGAUGCGACACCUCCAAAUAGGAGCGUCGAAGCUGCAUUAGCUCCGUUUGAAUGGCAUAGCUGA-CAACAAAUGGA----UGAAAAGGG--AAAUUG .........(((((..(((((((((((..((((.....)))).)))......))))))))((((((((..((((...)))).-...))))))))----......)))--)).... ( -28.30) >DroMoj_CAF1 12988 107 + 1 UCGUUGGCAUUCUCCAGCUGAUGCGAGACCUCCAGAUAGGAGCGUCGCAGCUGCAUCAGCUCCGUUUGAAUGGCAUAGCUAAGAAAUAGACAG-------CAUAAAU-GCGAUUA ((((((.(((((...((((((((((.(((((((.....)))).))).....))))))))))......))))).))..(((...........))-------)......-))))... ( -35.10) >DroAna_CAF1 12532 103 + 1 UCGUUGGCGUUCUCCAGUUGGUGGGAGACCUCCAGGUAGGAUCUCCUCAGCUGCAUCAGCUCCGUUUGAAUGGCAUAGCUGGAGGAGGAGUA------G------AGUUAGUUAG ...(((((....((((.((((.((....)).)))).).)))((((((((((((..(((..((.....)).)))..))))).)))))))....------.------.))))).... ( -34.30) >DroPer_CAF1 13970 109 + 1 UCGUUGGCAUUCUCCAGCUGGUGCGAGACCUCCAGAUAGGAGCGUCUCAGCUGCAUCAGUUCCGUUUGAAUGGCAUAGCUGGGGGGGAGAAAUAAGGGGGAAA------AGAUUA ((.(((.(.(((((((((((.((((((((((((.....)))).))))).....((((((......))).)))))))))))))))))..)...))).)).....------...... ( -37.50) >consensus UCGUUGGCAUUCUCCAGCUGAUGCGAGACCUCCAGAUAGGAGCGUCGCAGCUGCAUCAGCUCCGUUUGAAUGGCAUAGCUGAGCAAGAAAUAG_____GGAAAA_AA__AGAUUA ....((.(((((...((((((((((.(((((((.....)))).))).....))))))))))......))))).))........................................ (-21.01 = -21.15 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:15 2006